Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LL135_RS06055 Genome accession   NZ_CP086162
Coordinates   1177841..1178707 (-) Length   288 a.a.
NCBI ID   WP_002853827.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SHI3134     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1172841..1183707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL135_RS06035 (LL135_06035) metF 1174694..1175542 (+) 849 WP_002853590.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  LL135_RS06040 (LL135_06040) - 1175564..1175755 (-) 192 WP_002852856.1 membrane protein -
  LL135_RS06045 (LL135_06045) atpB 1175752..1176432 (-) 681 WP_002853903.1 F0F1 ATP synthase subunit A -
  LL135_RS06050 (LL135_06050) radA 1176501..1177841 (-) 1341 WP_002854001.1 DNA repair protein RadA Machinery gene
  LL135_RS06055 (LL135_06055) pilA 1177841..1178707 (-) 867 WP_002853827.1 signal recognition particle-docking protein FtsY Machinery gene
  LL135_RS06060 (LL135_06060) - 1178707..1179264 (-) 558 WP_002853633.1 TlpA family protein disulfide reductase -
  LL135_RS06065 (LL135_06065) - 1179347..1179973 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  LL135_RS06070 (LL135_06070) rny 1179894..1181447 (+) 1554 WP_002853829.1 ribonuclease Y -
  LL135_RS06075 (LL135_06075) - 1181456..1182013 (+) 558 WP_002853883.1 DedA family protein -
  LL135_RS06080 (LL135_06080) - 1182013..1183272 (+) 1260 WP_032589963.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32022.99 Da        Isoelectric Point: 5.2897

>NTDB_id=540869 LL135_RS06055 WP_002853827.1 1177841..1178707(-) (pilA) [Campylobacter jejuni strain SHI3134]
MFDFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=540869 LL135_RS06055 WP_002853827.1 1177841..1178707(-) (pilA) [Campylobacter jejuni strain SHI3134]
ATGTTTGATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGAGTTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAGCTTGCTTATTTATA
TAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAGCAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCGCAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCTCATGAGCT
TGAAAAAATTGTAAGAATTTCAAACAAAGCTTTAGAAGGTGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCGCTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTACAAGAATTTAATGCGAGTGCTTACTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.584

100

0.437