Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JW304_RS19475 Genome accession   NZ_CP070586
Coordinates   3460491..3461087 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain KP52813     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3455491..3466087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW304_RS19460 (JW304_19460) helD 3455699..3457753 (-) 2055 WP_046043000.1 DNA helicase IV -
  JW304_RS19465 (JW304_19465) - 3457878..3458324 (+) 447 WP_004224032.1 YccF domain-containing protein -
  JW304_RS19470 (JW304_19470) yccS 3458342..3460477 (+) 2136 WP_002898422.1 YccS family putative transporter -
  JW304_RS19475 (JW304_19475) sxy/tfoX 3460491..3461087 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  JW304_RS19480 (JW304_19480) sulA 3461436..3461945 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  JW304_RS19485 (JW304_19485) ompA 3462298..3463368 (+) 1071 WP_002898408.1 porin OmpA -
  JW304_RS19490 (JW304_19490) matP 3463500..3463952 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  JW304_RS19495 (JW304_19495) - 3464138..3465895 (+) 1758 WP_032414743.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=540824 JW304_RS19475 WP_004179217.1 3460491..3461087(-) (sxy/tfoX) [Klebsiella pneumoniae strain KP52813]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=540824 JW304_RS19475 WP_004179217.1 3460491..3461087(-) (sxy/tfoX) [Klebsiella pneumoniae strain KP52813]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCAATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51