Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   LL148_RS03305 Genome accession   NZ_CP086161
Coordinates   628444..628827 (+) Length   127 a.a.
NCBI ID   WP_002854812.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SHI4648     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 623444..633827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL148_RS03285 (LL148_03285) - 623523..625457 (-) 1935 WP_002854954.1 RNB domain-containing ribonuclease -
  LL148_RS03290 (LL148_03290) ilvC 625576..626598 (+) 1023 WP_180819996.1 ketol-acid reductoisomerase -
  LL148_RS03295 (LL148_03295) - 626602..627684 (+) 1083 WP_002854844.1 divergent polysaccharide deacetylase family protein -
  LL148_RS03300 (LL148_03300) dprA 627674..628447 (+) 774 WP_002855109.1 DNA-processing protein DprA Machinery gene
  LL148_RS03305 (LL148_03305) dprB 628444..628827 (+) 384 WP_002854812.1 Holliday junction resolvase RuvX Machinery gene
  LL148_RS03310 (LL148_03310) - 628856..629695 (+) 840 WP_011812724.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  LL148_RS03315 (LL148_03315) msrA 629871..630368 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  LL148_RS03320 (LL148_03320) ppa 630409..630927 (-) 519 WP_002855031.1 inorganic diphosphatase -
  LL148_RS03325 (LL148_03325) adk 630937..631515 (-) 579 WP_002855137.1 adenylate kinase -
  LL148_RS03330 (LL148_03330) aspS 631512..633263 (-) 1752 WP_227898250.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14159.67 Da        Isoelectric Point: 8.4950

>NTDB_id=540807 LL148_RS03305 WP_002854812.1 628444..628827(+) (dprB) [Campylobacter jejuni strain SHI4648]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGIADTRKKDGKLDSLAAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=540807 LL148_RS03305 WP_002854812.1 628444..628827(+) (dprB) [Campylobacter jejuni strain SHI4648]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGTTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGAATACGGCATAGCCGATACGCGCAA
AAAAGATGGTAAATTAGATTCTTTAGCTGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.094

100

0.441