Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   LL138_RS03050 Genome accession   NZ_CP086160
Coordinates   585190..585573 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain SHI5328     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 580190..590573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL138_RS03030 (LL138_03030) - 580269..582203 (-) 1935 WP_002852122.1 RNB domain-containing ribonuclease -
  LL138_RS03035 (LL138_03035) ilvC 582322..583344 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  LL138_RS03040 (LL138_03040) - 583348..584430 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  LL138_RS03045 (LL138_03045) dprA 584420..585193 (+) 774 WP_002859984.1 DNA-processing protein DprA Machinery gene
  LL138_RS03050 (LL138_03050) dprB 585190..585573 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  LL138_RS03055 (LL138_03055) - 585602..586441 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  LL138_RS03060 (LL138_03060) msrA 586617..587114 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  LL138_RS03065 (LL138_03065) ppa 587156..587674 (-) 519 WP_002867724.1 inorganic diphosphatase -
  LL138_RS03070 (LL138_03070) adk 587684..588262 (-) 579 WP_002859580.1 adenylate kinase -
  LL138_RS03075 (LL138_03075) aspS 588259..590010 (-) 1752 WP_002908827.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=540760 LL138_RS03050 WP_002852281.1 585190..585573(+) (dprB) [Campylobacter jejuni strain SHI5328]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=540760 LL138_RS03050 WP_002852281.1 585190..585573(+) (dprB) [Campylobacter jejuni strain SHI5328]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCCTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449