Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LL147_RS06070 Genome accession   NZ_CP086159
Coordinates   1176886..1178226 (-) Length   446 a.a.
NCBI ID   WP_002854001.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SHI6972     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1171886..1183226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL147_RS06045 (LL147_06045) - 1172023..1172793 (+) 771 WP_002854059.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  LL147_RS06050 (LL147_06050) metE 1172805..1175069 (+) 2265 WP_002853777.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  LL147_RS06055 (LL147_06055) metF 1175079..1175927 (+) 849 WP_002853590.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  LL147_RS06060 (LL147_06060) - 1175949..1176140 (-) 192 WP_002852856.1 membrane protein -
  LL147_RS06065 (LL147_06065) atpB 1176137..1176817 (-) 681 WP_002853903.1 F0F1 ATP synthase subunit A -
  LL147_RS06070 (LL147_06070) radA 1176886..1178226 (-) 1341 WP_002854001.1 DNA repair protein RadA Machinery gene
  LL147_RS06075 (LL147_06075) pilA 1178226..1179092 (-) 867 WP_002853827.1 signal recognition particle-docking protein FtsY Machinery gene
  LL147_RS06080 (LL147_06080) - 1179092..1179649 (-) 558 WP_002853633.1 TlpA family protein disulfide reductase -
  LL147_RS06085 (LL147_06085) - 1179732..1180358 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  LL147_RS06090 (LL147_06090) rny 1180279..1181832 (+) 1554 WP_002853829.1 ribonuclease Y -
  LL147_RS06095 (LL147_06095) - 1181841..1182398 (+) 558 WP_002853883.1 DedA family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49038.94 Da        Isoelectric Point: 6.9288

>NTDB_id=540730 LL147_RS06070 WP_002854001.1 1176886..1178226(-) (radA) [Campylobacter jejuni strain SHI6972]
MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVLKELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKDYSILIIDSIQTLYSNKITSAAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=540730 LL147_RS06070 WP_002854001.1 1176886..1178226(-) (radA) [Campylobacter jejuni strain SHI6972]
ATGGCAAAGAATAAAGCACTTTTTGAATGTCAAGCTTGTGGAAATCAACAAAGCAAATGGCTTGGAAAATGTCCTGATTG
TGGAGCTTGGGATAGTTTTGTAGAATTAAAAGCTGAGCAAATTAAAGTTTTAAAAGAGCTTGCGCAAGTTAGTATGAAAA
CAAGTGAGGCTGTTTGTATTGAAGATGTGGAGTTAGAACATTTTACAAGATACAGTACAGATGATAATGAGCTTGATTTG
GTTTTAGGCGGAGGGCTTGTTGAAGGTTCTTTAGTGCTTATAGGCGGAAGTCCAGGTGTGGGAAAATCTACGCTTTTATT
AAAAATTGCTTCAAATTTAGCTAAACAGGGTAAAAAAGTGCTTTATGTCAGTGGCGAAGAAAGTAAAGCTCAGATTAAAT
TAAGAGCTGATCGCCTTGAGGCTAATACCCCGAATTTATTTTTACTTACTGAACTTTGCCTTGAAAATATTTTAGAAGAA
TTGCACAAAAAAGATTATAGCATTCTTATCATTGATTCTATACAAACTCTATATTCAAATAAAATTACTTCAGCAGCAGG
AAGCATCACTCAAGTGCGTGAGATTACTTTTGAGCTTATGCGTGTGAGTAAGGCTTATAATATCAGTACTTTTATCATAG
GGCACATTACTAAAGAAGGTGCTATAGCAGGACCTAGAGTTCTTGAGCATATGGTAGATGTGGTGCTTTATTTTGAGGGA
GATGCCACTAAAGAAATTAGACTTTTAAGAGGCTTTAAAAATCGTTTTGGTGGAACGAATGAAGTAGGTATTTTTGAGAT
GACTGCTAAGGGTTTGATCAGTGCAAAAGATTTGGCAAATCGTTTTTTTACTCGTGGAAAGGCTATTTCAGGAAGTGCTT
TAGGTGTTGTGATGGAAGGATCTCGTGCCTTGGTTTTAGAAGTTCAAGCTTTAGTGTGTGAAAGTTCTTACCCAAAACGC
AGCGCTACAGGATATGAAAAAAATCGCTTAGATATGCTTTTGGCTTTGCTTGAAAGAAAACTTGAAATTCCTTTAGGGCA
TTATGATGTATTTGTAAATATTAGCGGCGGAGTAAAAGTAAGTGAAACTGCGGCGGATTTGGCTGTAGTTGCAGCTATTA
TTTCAAGTTTTAAAAATCGCCCTTTGAGCAAAGATAGTATTTTTATAGGGGAGCTTAGTTTAAATGGAGAAATTAGAGAG
GTTTTTAGCCTTGATACGCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCCATTGTTCCTTCTAAGCCTTTGGA
AGATATAGGACTTAAGTGTTTTGTTGCTAAAGAACTTTCACAAGTTTTAGAATGGATGTAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)

AAA domain (AAA_25)

(71-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

46.085

100

0.462
  radA Streptococcus pneumoniae Rx1

46.085

100

0.462
  radA Streptococcus pneumoniae D39

46.085

100

0.462
  radA Streptococcus pneumoniae TIGR4

46.085

100

0.462
  radA Streptococcus mitis SK321

46.067

99.776

0.46
  radA Streptococcus mitis NCTC 12261

46.067

99.776

0.46
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.667

97.534

0.455