Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JW298_RS13075 Genome accession   NZ_CP070559
Coordinates   1944775..1945389 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain CF50935     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1939775..1950389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW298_RS13060 (JW298_13060) helD 1939999..1942053 (-) 2055 WP_058842435.1 DNA helicase IV -
  JW298_RS13065 (JW298_13065) - 1942179..1942625 (+) 447 WP_003035892.1 YccF domain-containing protein -
  JW298_RS13070 (JW298_13070) yccS 1942644..1944797 (+) 2154 WP_032939270.1 YccS family putative transporter -
  JW298_RS13075 (JW298_13075) sxy/tfoX 1944775..1945389 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  JW298_RS13080 (JW298_13080) sulA 1945607..1946116 (+) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  JW298_RS13085 (JW298_13085) ompA 1946474..1947532 (+) 1059 WP_003836839.1 porin OmpA -
  JW298_RS13090 (JW298_13090) matP 1947622..1948074 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  JW298_RS13095 (JW298_13095) - 1948260..1950020 (+) 1761 WP_003035878.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=540681 JW298_RS13075 WP_003035889.1 1944775..1945389(-) (sxy/tfoX) [Citrobacter freundii strain CF50935]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=540681 JW298_RS13075 WP_003035889.1 1944775..1945389(-) (sxy/tfoX) [Citrobacter freundii strain CF50935]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACCATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTAACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686