Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   DCF50_RS10690 Genome accession   NC_018867
Coordinates   2211053..2211979 (-) Length   308 a.a.
NCBI ID   WP_015044194.1    Uniprot ID   -
Organism   Dehalobacter sp. CF     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2206053..2216979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCF50_RS10675 (DCF50_p2155) - 2207778..2209076 (-) 1299 WP_015044191.1 amidohydrolase -
  DCF50_RS10680 (DCF50_p2156) mtnA 2209190..2210224 (-) 1035 WP_015044192.1 S-methyl-5-thioribose-1-phosphate isomerase -
  DCF50_RS10685 (DCF50_p2157) mtnP 2210268..2211050 (-) 783 WP_015044193.1 S-methyl-5'-thioadenosine phosphorylase -
  DCF50_RS10690 (DCF50_p2158) pilA 2211053..2211979 (-) 927 WP_015044194.1 signal recognition particle-docking protein FtsY Machinery gene
  DCF50_RS10695 (DCF50_p2159) smc 2212450..2216043 (-) 3594 WP_015044195.1 chromosome segregation protein SMC -
  DCF50_RS10700 (DCF50_p2160) rnc 2216048..2216794 (-) 747 WP_015044196.1 ribonuclease III -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 33542.45 Da        Isoelectric Point: 4.9717

>NTDB_id=54067 DCF50_RS10690 WP_015044194.1 2211053..2211979(-) (pilA) [Dehalobacter sp. CF]
MAGIFSRLKERLTKTREGFVGKVEQLFTGSGKIDEDLYEELEEILLQSDVGVNTTLKLVGMLRASVKEQKINDRSELRDV
LQEHITALLGEEIPLSFADSKPTVYLIVGVNGVGKTTTIGKLAKNLQGQGKNVLLAAGDTFRAAAIEQLEVWGERSGTEV
IKQSEGADPAAVAFDALHAARSRNADVLLIDTAGRLHNKVNLMKELTKIKKVVEREVPDAPHEVLLVLDATTGQNAIQQV
KLFKEAVDVTGIILTKLDGTAKGGVILGIRNEADIPVKLIGIGEGAEDLRPFEPREFARALFDRSEEE

Nucleotide


Download         Length: 927 bp        

>NTDB_id=54067 DCF50_RS10690 WP_015044194.1 2211053..2211979(-) (pilA) [Dehalobacter sp. CF]
GTGGCAGGAATATTTTCCAGACTTAAAGAGCGCTTGACCAAAACCAGAGAAGGTTTTGTCGGCAAAGTTGAACAGCTCTT
TACCGGCTCAGGCAAAATTGATGAAGATCTTTATGAAGAATTGGAAGAGATTCTACTTCAATCAGATGTAGGTGTCAATA
CAACACTGAAATTGGTTGGAATGCTGCGTGCATCCGTCAAAGAACAAAAAATTAACGACCGCTCCGAGCTGAGGGATGTA
CTGCAAGAACATATTACTGCGCTATTGGGTGAAGAGATTCCCTTGTCTTTTGCAGATTCCAAGCCCACCGTCTATCTGAT
CGTTGGTGTCAACGGTGTAGGAAAAACGACCACGATTGGCAAGCTGGCCAAAAATCTGCAGGGCCAGGGCAAAAATGTTT
TGCTGGCGGCAGGGGATACTTTCCGAGCAGCAGCGATCGAGCAATTGGAAGTATGGGGAGAACGGTCCGGGACAGAGGTC
ATCAAACAGTCGGAGGGGGCTGATCCTGCTGCGGTGGCTTTCGATGCGCTTCATGCGGCAAGATCCCGGAATGCAGATGT
CCTCTTGATCGATACTGCCGGAAGACTGCACAATAAAGTGAATCTGATGAAAGAATTGACCAAGATCAAAAAGGTGGTCG
AGCGCGAAGTTCCGGATGCCCCGCACGAGGTGCTGCTGGTACTCGATGCAACGACCGGACAGAACGCCATCCAGCAGGTG
AAACTGTTCAAGGAAGCAGTCGATGTGACAGGGATCATACTCACCAAGCTGGACGGTACAGCTAAAGGCGGCGTAATCCT
GGGGATCCGCAATGAAGCGGATATCCCGGTAAAATTGATTGGAATCGGTGAAGGGGCAGAAGATTTAAGGCCTTTTGAAC
CGAGGGAATTTGCCCGGGCCTTGTTTGACCGTTCTGAGGAGGAATAG

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(102-302)

SRP54-type protein, helical bundle domain (SRP54_N)

(20-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.835

98.377

0.49

Multiple sequence alignment