Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   LLZ83_RS05200 Genome accession   NZ_CP086130
Coordinates   981316..982386 (-) Length   356 a.a.
NCBI ID   WP_000817930.1    Uniprot ID   Q3K1A9
Organism   Streptococcus agalactiae strain MIN-180     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 976316..987386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLZ83_RS05180 (LLZ83_05180) - 976851..977603 (+) 753 WP_000923535.1 ABC transporter ATP-binding protein -
  LLZ83_RS05185 (LLZ83_05185) - 977605..979560 (+) 1956 WP_000499547.1 FtsX-like permease family protein -
  LLZ83_RS05190 (LLZ83_05190) braR 979670..980338 (+) 669 WP_000076874.1 response regulator transcription factor Regulator
  LLZ83_RS05195 (LLZ83_05195) - 980335..981273 (+) 939 WP_000620981.1 HAMP domain-containing sensor histidine kinase -
  LLZ83_RS05200 (LLZ83_05200) xerS 981316..982386 (-) 1071 WP_000817930.1 tyrosine recombinase XerS Machinery gene
  LLZ83_RS05205 (LLZ83_05205) - 982581..984175 (+) 1595 Protein_946 peptide ABC transporter substrate-binding protein -
  LLZ83_RS05210 (LLZ83_05210) - 984208..984981 (-) 774 WP_000622398.1 DUF3307 domain-containing protein -
  LLZ83_RS05215 (LLZ83_05215) - 984971..985657 (-) 687 WP_000280305.1 SatD family protein -
  LLZ83_RS05220 (LLZ83_05220) ffh 985724..987289 (-) 1566 WP_000863589.1 signal recognition particle protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41361.55 Da        Isoelectric Point: 9.3616

>NTDB_id=540658 LLZ83_RS05200 WP_000817930.1 981316..982386(-) (xerS) [Streptococcus agalactiae strain MIN-180]
MKRELLLEKIDELKEIMPWYVLEYYQSKLSVPYSFTTLYEYLKEYRRFLEWLLDSGVANCHHIAEIELSVLENLTKKDME
AFILYLRERPLLNANTRQNGVSQTTINRTLSALSSLFKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGNETIEFLEYIDCEYQNKLSKRALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDS
VNVASFAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVPNRIDASSVEKMVAKYSQDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=540658 LLZ83_RS05200 WP_000817930.1 981316..982386(-) (xerS) [Streptococcus agalactiae strain MIN-180]
ATGAAACGTGAATTACTACTCGAAAAAATCGATGAACTAAAAGAAATTATGCCTTGGTATGTTCTAGAATACTATCAATC
AAAGCTTTCTGTTCCTTATAGTTTCACAACGCTCTACGAATATTTAAAAGAATATAGACGTTTTCTTGAATGGTTATTGG
ATTCTGGTGTTGCTAATTGTCATCACATTGCAGAAATTGAGCTTTCAGTTTTAGAAAACCTTACTAAAAAAGATATGGAA
GCTTTTATACTATATTTACGAGAACGCCCTTTATTAAATGCTAACACAAGGCAAAATGGGGTGTCTCAAACCACCATTAA
CAGAACTCTATCTGCCTTATCTAGTCTTTTCAAATACCTTACTGAAGAGGTTGAAAATGCTGACGGGGAGCCTTACTTTT
ATCGCAATGTCATGAAAAAAGTCTCAACCAAAAAGAAAAAGGAAACTTTAGCTTCTCGGGCAGAAAATATTAAACAAAAG
TTATTTTTGGGCAATGAAACGATAGAATTCTTAGAGTATATAGATTGTGAATATCAAAACAAACTTTCCAAACGTGCTTT
AGCTTTTTTCAACAAAAATAAAGAGAGAGATTTAGCTATTATTGCTTTGCTACTAGCTTCAGGGGTGCGTCTATCTGAGG
CAGTAAACTTAGATTTAAAGGATATTAACCTTAATGTAATGGTTATTGATGTCACACGAAAAGGGGGGAAAAGGGACTCT
GTCAATGTCGCTAGCTTTGCGAAGCCCTACCTTGCTAATTATTTAGACATCCGTAAAAATAGATACAAAGCAGAAAATCA
GGACATTGCACTATTTTTATCAGAATACCGTGGGGTGCCAAATCGTATTGATGCTTCAAGTGTTGAGAAAATGGTCGCTA
AATATTCCCAGGATTTTAAGGTTCGTGTAACACCTCATAAACTAAGGCATACTCTTGCTACTAGGCTATATGATGCTACA
AAATCTCAAGTATTAGTTAGCCACCAATTAGGTCATGCTTCCACTCAAGTTACTGACCTATATACCCATATTGTTAACGA
TGAACAAAAGAACGCTTTAGATAAACTATAG

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(184-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3K1A9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.708

100

0.837