Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JW296_RS03565 Genome accession   NZ_CP070549
Coordinates   263670..264284 (+) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain CF49969     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 258670..269284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW296_RS03545 (JW296_03545) - 259052..260812 (-) 1761 WP_003035878.1 Lon protease family protein -
  JW296_RS03550 (JW296_03550) matP 260998..261450 (+) 453 WP_003035881.1 macrodomain Ter protein MatP -
  JW296_RS03555 (JW296_03555) ompA 261540..262586 (-) 1047 WP_003035883.1 porin OmpA -
  JW296_RS03560 (JW296_03560) sulA 262944..263453 (-) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  JW296_RS03565 (JW296_03565) sxy/tfoX 263670..264284 (+) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  JW296_RS03570 (JW296_03570) yccS 264262..266415 (-) 2154 WP_032939270.1 YccS family putative transporter -
  JW296_RS03575 (JW296_03575) - 266434..266880 (-) 447 WP_003035892.1 YccF domain-containing protein -
  JW296_RS03580 (JW296_03580) helD 267006..269060 (+) 2055 WP_102191186.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=540635 JW296_RS03565 WP_003035889.1 263670..264284(+) (sxy/tfoX) [Citrobacter freundii strain CF49969]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=540635 JW296_RS03565 WP_003035889.1 263670..264284(+) (sxy/tfoX) [Citrobacter freundii strain CF49969]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGCATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686