Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JW295_RS25385 Genome accession   NZ_CP070544
Coordinates   4696537..4697151 (+) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain CF48846     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4691537..4702151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW295_RS25365 (JW295_25375) - 4691906..4693666 (-) 1761 WP_003035878.1 AAA family ATPase -
  JW295_RS25370 (JW295_25380) matP 4693852..4694304 (+) 453 WP_003035881.1 macrodomain Ter protein MatP -
  JW295_RS25375 (JW295_25385) ompA 4694394..4695452 (-) 1059 WP_003836839.1 porin OmpA -
  JW295_RS25380 (JW295_25390) sulA 4695810..4696319 (-) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  JW295_RS25385 (JW295_25395) sxy/tfoX 4696537..4697151 (+) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  JW295_RS25390 (JW295_25400) yccS 4697129..4699282 (-) 2154 WP_032939270.1 YccS family putative transporter -
  JW295_RS25395 (JW295_25405) - 4699301..4699747 (-) 447 WP_003035892.1 YccF domain-containing protein -
  JW295_RS25400 (JW295_25410) helD 4699873..4701927 (+) 2055 WP_058842435.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=540634 JW295_RS25385 WP_003035889.1 4696537..4697151(+) (sxy/tfoX) [Citrobacter freundii strain CF48846]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=540634 JW295_RS25385 WP_003035889.1 4696537..4697151(+) (sxy/tfoX) [Citrobacter freundii strain CF48846]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACCATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTAACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686