Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JW290_RS18750 Genome accession   NZ_CP070520
Coordinates   3834685..3835206 (+) Length   173 a.a.
NCBI ID   WP_045362433.1    Uniprot ID   A0AAW9LSD3
Organism   Klebsiella aerogenes strain EA46506     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3829685..3840206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW290_RS18725 (JW290_18725) - 3829963..3830379 (+) 417 WP_205460303.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JW290_RS18730 (JW290_18730) - 3830383..3830736 (+) 354 WP_020079872.1 MmcQ/YjbR family DNA-binding protein -
  JW290_RS18735 (JW290_18735) - 3830738..3831055 (-) 318 WP_151585628.1 hypothetical protein -
  JW290_RS18740 (JW290_18740) - 3831055..3831462 (-) 408 WP_015368748.1 hypothetical protein -
  JW290_RS18745 (JW290_18745) uvrA 3831605..3834430 (-) 2826 WP_015368747.1 excinuclease ABC subunit UvrA -
  JW290_RS18750 (JW290_18750) ssb 3834685..3835206 (+) 522 WP_045362433.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JW290_RS18755 (JW290_18755) - 3835286..3836866 (-) 1581 WP_205460812.1 lytic transglycosylase F -
  JW290_RS18760 (JW290_18760) iraM 3837318..3837677 (+) 360 WP_015704054.1 anti-adapter protein IraM -
  JW290_RS18765 (JW290_18765) - 3837745..3838026 (-) 282 WP_015704055.1 YjcB family protein -
  JW290_RS18770 (JW290_18770) - 3838578..3840182 (+) 1605 WP_042894962.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18668.67 Da        Isoelectric Point: 5.2358

>NTDB_id=540528 JW290_RS18750 WP_045362433.1 3834685..3835206(+) (ssb) [Klebsiella aerogenes strain EA46506]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANFTLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEIVVNVGGTMQMLGGRQGGGAPAGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAAPS
NEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=540528 JW290_RS18750 WP_045362433.1 3834685..3835206(+) (ssb) [Klebsiella aerogenes strain EA46506]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCAAGTGG
CGGCGCTGTCGCCAACTTCACGCTGGCAACTTCCGAATCCTGGCGCGATAAGCAAACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTCGCTGGCGAATACCTGCGTAAAGGCTCTCAGGTTTATATC
GAAGGCCAGCTGCGCACCCGTAAATGGACCGATCAGTCCGGTCAGGACAAGTACACCACTGAAATCGTGGTAAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGCGGCCAGCAACAGGGCGGTTGGGGTCAGC
CTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGGCCCCGGCAGCGCCATCT
AACGAACCGCCGATGGACTTCGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.769
  ssb Glaesserella parasuis strain SC1401

60.109

100

0.636
  ssb Neisseria meningitidis MC58

48.603

100

0.503
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.503
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.376