Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JW290_RS01470 Genome accession   NZ_CP070520
Coordinates   218168..218791 (+) Length   207 a.a.
NCBI ID   WP_047064077.1    Uniprot ID   -
Organism   Klebsiella aerogenes strain EA46506     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 213168..223791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW290_RS01450 (JW290_01450) - 213317..215074 (-) 1758 WP_032705615.1 Lon protease family protein -
  JW290_RS01455 (JW290_01455) matP 215260..215712 (+) 453 WP_015367432.1 macrodomain Ter protein MatP -
  JW290_RS01460 (JW290_01460) ompA 215804..216856 (-) 1053 WP_026612358.1 porin OmpA -
  JW290_RS01465 (JW290_01465) sulA 217209..217718 (-) 510 WP_020079240.1 SOS-induced cell division inhibitor SulA -
  JW290_RS01470 (JW290_01470) sxy/tfoX 218168..218791 (+) 624 WP_047064077.1 TfoX/Sxy family DNA transformation protein Regulator
  JW290_RS01475 (JW290_01475) yccS 218779..220914 (-) 2136 WP_015367427.1 YccS family putative transporter -
  JW290_RS01480 (JW290_01480) - 220932..221378 (-) 447 WP_020079238.1 YccF domain-containing protein -
  JW290_RS01485 (JW290_01485) helD 221502..223556 (+) 2055 WP_205460487.1 DNA helicase IV -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23624.34 Da        Isoelectric Point: 9.5468

>NTDB_id=540510 JW290_RS01470 WP_047064077.1 218168..218791(+) (sxy/tfoX) [Klebsiella aerogenes strain EA46506]
MKKISKLRFLQFQECLSPLGKISSRPLFGGYSLAIENTVFAMVAEGEIYLRVCEQSAEYRVEHHSPMLIMRKNGRPVALK
YYRIDEALWQDSKMLFHLSELSLHTARSEKQHQRNSGRLKDLPNISFHMELMLIHAGITDVKMLRTLGAEMSWLKLREHN
KGISINVLESLAGAIAGIHSAALPAQRRQELREWANTQGYGVEDYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=540510 JW290_RS01470 WP_047064077.1 218168..218791(+) (sxy/tfoX) [Klebsiella aerogenes strain EA46506]
ATGAAGAAAATTTCAAAATTACGGTTCCTCCAGTTTCAGGAGTGCCTTTCCCCCTTAGGTAAAATCAGTAGCCGGCCTTT
ATTTGGCGGATACAGCCTGGCGATAGAGAATACCGTGTTTGCCATGGTGGCCGAGGGCGAAATCTATCTTAGAGTGTGCG
AGCAAAGCGCAGAATATCGGGTTGAACATCATAGCCCGATGTTAATCATGCGCAAAAATGGTCGGCCGGTGGCGCTAAAA
TACTATCGTATAGATGAAGCACTGTGGCAGGACAGTAAAATGCTGTTTCACCTGTCAGAGCTGTCATTGCATACGGCGCG
TAGCGAAAAGCAGCATCAGCGTAATTCCGGCAGGCTAAAGGATTTGCCTAATATCAGCTTTCACATGGAATTGATGTTGA
TCCATGCCGGAATAACCGATGTGAAAATGCTGCGTACACTGGGGGCGGAAATGAGCTGGTTAAAATTGAGAGAGCATAAT
AAAGGAATATCAATCAATGTCCTTGAGTCCCTGGCGGGCGCGATTGCCGGCATTCATTCCGCCGCGCTCCCGGCGCAGCG
GCGCCAGGAGCTACGGGAGTGGGCTAATACGCAAGGATACGGCGTGGAGGATTATTCCGGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.792

95.169

0.502