Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   I6J48_RS11505 Genome accession   NZ_CP070518
Coordinates   2428282..2429166 (+) Length   294 a.a.
NCBI ID   WP_205468503.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain FDAARGOS_1218     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2423282..2434166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J48_RS11480 (I6J48_11480) - 2423595..2424842 (-) 1248 WP_005038511.1 YihY family inner membrane protein -
  I6J48_RS11485 (I6J48_11485) wrbA 2425204..2425812 (+) 609 WP_005038513.1 NAD(P)H:quinone oxidoreductase -
  I6J48_RS11490 (I6J48_11490) - 2425859..2426434 (-) 576 WP_004639480.1 xanthine phosphoribosyltransferase -
  I6J48_RS11495 (I6J48_11495) - 2426506..2427219 (-) 714 WP_003653602.1 DUF3108 domain-containing protein -
  I6J48_RS11500 (I6J48_11500) - 2427378..2428049 (-) 672 WP_005038515.1 hypothetical protein -
  I6J48_RS11505 (I6J48_11505) tonB2 2428282..2429166 (+) 885 WP_205468503.1 TonB family protein Machinery gene
  I6J48_RS11510 (I6J48_11510) ybeY 2429268..2429750 (-) 483 WP_017390193.1 rRNA maturation RNase YbeY -
  I6J48_RS11515 (I6J48_11515) - 2429760..2430848 (-) 1089 WP_003653596.1 PhoH family protein -
  I6J48_RS11520 (I6J48_11520) miaB 2430886..2432337 (-) 1452 WP_004639472.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33522.98 Da        Isoelectric Point: 9.1533

>NTDB_id=540503 I6J48_RS11505 WP_205468503.1 2428282..2429166(+) (tonB2) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
MLNKRSLSIEPFYHWWQDRVFIAATILAVLLHIFVLLIHFAMPSPSEQSTKEIAISIRSSNEPVQQADFLAQADQQGSGA
FREAHRTSSDTPNPTSNDASTGDAQLETLQKVQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRRQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKLQQLKGEVRLMVILNAQGGIRAIRL
LESSGHSVLDEAAKSSVRRGAPFGHFDTNMKDISELRIVRTWRFDPAQAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=540503 I6J48_RS11505 WP_205468503.1 2428282..2429166(+) (tonB2) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
ATGTTGAATAAAAGAAGTCTATCCATAGAGCCTTTTTATCATTGGTGGCAAGACCGAGTCTTTATTGCTGCGACAATATT
GGCAGTCTTACTGCATATTTTTGTGTTGCTCATTCACTTTGCGATGCCTAGTCCATCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGATCAAGCAATGAGCCAGTTCAGCAGGCAGACTTTTTGGCGCAAGCAGACCAGCAAGGTTCAGGCGCA
TTTCGTGAAGCTCACCGTACCTCTAGTGATACTCCAAATCCCACGTCTAATGATGCTTCAACTGGAGATGCGCAGTTAGA
AACTTTGCAAAAGGTTCAGCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTCTTAATGACTGTTTTGAGTTGGCAAAAAC
AAGCTGACGCCAGTCAAAGAAAAAAAGAATTAGAACAATTACAAAGCCAATTTCAGGCAAAAGCTGCGATGGTTGCAAGT
CTCGAAGCACAATATTTACAACGTAGACAAGATTTCAGCCGCCAGCAAAAAATAAAAACAGTAGATGGAATTCAGGCGAA
AAAAGATGCCTCGGCTGCTTATTTAGATAAGTTCCGTGAAAAAGTGGAGTTGTATGGTAATCGCTATTATCCAGAAGAAG
CCAAACTGCAACAGTTGAAAGGCGAAGTTCGTTTAATGGTTATTTTAAATGCACAAGGAGGGATTCGTGCAATCCGGTTA
CTTGAGAGCTCAGGGCATTCGGTATTGGATGAAGCTGCAAAGTCTTCAGTACGTCGCGGCGCACCATTTGGACATTTTGA
TACCAATATGAAAGATATTTCTGAATTGCGTATTGTACGTACTTGGCGTTTCGATCCCGCTCAAGCAGAATTTGAAGTGC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

88.776

100

0.888