Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   I6J48_RS07685 Genome accession   NZ_CP070518
Coordinates   1639850..1640176 (-) Length   108 a.a.
NCBI ID   WP_003654486.1    Uniprot ID   A0AAW8QRU4
Organism   Acinetobacter calcoaceticus strain FDAARGOS_1218     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1634850..1645176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J48_RS07665 (I6J48_07665) - 1634947..1635576 (-) 630 WP_205469988.1 FHA domain-containing protein -
  I6J48_RS07670 (I6J48_07670) gspD 1635618..1637894 (-) 2277 WP_205469989.1 type II secretion system secretin GspD -
  I6J48_RS07675 (I6J48_07675) - 1637936..1638772 (-) 837 WP_005045186.1 type II secretion system protein N -
  I6J48_RS07680 (I6J48_07680) gspN 1638772..1639515 (-) 744 WP_151744780.1 type II secretion system protein N -
  I6J48_RS07685 (I6J48_07685) hns 1639850..1640176 (-) 327 WP_003654486.1 H-NS family nucleoid-associated regulatory protein Regulator
  I6J48_RS07690 (I6J48_07690) - 1640371..1640811 (-) 441 WP_004640721.1 thioesterase family protein -
  I6J48_RS07695 (I6J48_07695) - 1640819..1642012 (-) 1194 WP_017391168.1 membrane protein -
  I6J48_RS07700 (I6J48_07700) - 1642022..1642864 (-) 843 WP_205469990.1 hypothetical protein -
  I6J48_RS07705 (I6J48_07705) - 1642873..1643640 (-) 768 WP_205469991.1 uroporphyrinogen-III synthase -
  I6J48_RS07710 (I6J48_07710) hemC 1643644..1644561 (-) 918 WP_205469992.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12506.17 Da        Isoelectric Point: 5.0524

>NTDB_id=540478 I6J48_RS07685 WP_003654486.1 1639850..1640176(-) (hns) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
MKPDISELSVEELKRLQEEAEALIVSKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNSE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=540478 I6J48_RS07685 WP_003654486.1 1639850..1640176(-) (hns) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
ATGAAGCCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGTTTACAAGAAGAAGCTGAAGCTTTAATTGTAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATCGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTTGAACCGCGTTACCGTAACAAAAACAATTCTGAA
GAGACTTGGACTGGCCGTGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

98.148

100

0.981