Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   I6J48_RS07175 Genome accession   NZ_CP070518
Coordinates   1528649..1530877 (+) Length   742 a.a.
NCBI ID   WP_080026222.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain FDAARGOS_1218     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1523649..1535877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J48_RS07150 (I6J48_07150) - 1525163..1525501 (-) 339 WP_205469958.1 tRNA-binding protein -
  I6J48_RS07155 (I6J48_07155) - 1525745..1526008 (+) 264 WP_003654645.1 DUF2798 domain-containing protein -
  I6J48_RS07160 (I6J48_07160) - 1526074..1526418 (-) 345 WP_003654643.1 hypothetical protein -
  I6J48_RS07165 (I6J48_07165) gspG 1526687..1527271 (-) 585 WP_167370587.1 type II secretion system major pseudopilin GspG -
  I6J48_RS07170 (I6J48_07170) gspF 1527295..1528500 (-) 1206 WP_205469959.1 type II secretion system inner membrane protein GspF -
  I6J48_RS07175 (I6J48_07175) priA 1528649..1530877 (+) 2229 WP_080026222.1 primosomal protein N' Machinery gene
  I6J48_RS07180 (I6J48_07180) - 1530954..1532798 (+) 1845 WP_205469960.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  I6J48_RS07185 (I6J48_07185) hslO 1532963..1533838 (+) 876 WP_205469961.1 Hsp33 family molecular chaperone HslO -
  I6J48_RS07190 (I6J48_07190) - 1533976..1534587 (+) 612 WP_056483078.1 LysE family translocator -
  I6J48_RS07195 (I6J48_07195) - 1534733..1535686 (+) 954 WP_056483081.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84120.99 Da        Isoelectric Point: 8.5633

>NTDB_id=540475 I6J48_RS07175 WP_080026222.1 1528649..1530877(+) (priA) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTEAQYERAQVGSRVAISFGRQNLIGIITEKVNPHEPFTGNFQLKAISELL
DEQPILDEQVLSLLTWSAQYYQFPVGEVMQTALPAILRQGKPMDVLFHLWKITPCDNVEALLKRSVKQQDAYQILKLHPA
GTTENILNLSGVETATLKALEKKGLVECTLEPHDFSPTPVQLAQMPLTLNEDQKQATQQVIKAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQSCPVILGSATPSIDSYYLVETGKLTSLQLNKRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKHTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTI
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPEHDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQVAGEIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWSQ
LVHAPRQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=540475 I6J48_RS07175 WP_080026222.1 1528649..1530877(+) (priA) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCGAAGCACAATATGAACGGGCTCAAGTAGGCTCACGCGTCGCTATTTCATTTGGGCGACAAAACCTGA
TTGGTATCATCACTGAAAAAGTGAATCCACATGAGCCATTTACAGGCAACTTTCAGCTTAAAGCCATTTCTGAACTTTTA
GATGAACAGCCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCCGCACAATATTACCAATTTCCAGTTGGCGA
GGTCATGCAAACCGCCCTTCCGGCCATACTACGTCAGGGCAAACCGATGGACGTTTTGTTCCATCTCTGGAAAATCACTC
CATGCGACAATGTTGAGGCACTGCTTAAACGTTCAGTGAAGCAACAAGATGCTTATCAGATTTTAAAGTTACATCCTGCT
GGAACAACAGAGAACATTCTCAATTTAAGTGGCGTAGAAACTGCCACACTTAAAGCGCTAGAAAAGAAAGGTTTGGTTGA
ATGTACGCTTGAACCACATGACTTTAGCCCTACACCTGTTCAATTGGCACAAATGCCGCTCACGCTAAATGAAGACCAAA
AGCAAGCAACCCAACAGGTTATTAAAGCACAGCATCAATACCAAGCATTTTTGTTAGATGGTTTAACAGGTAGCGGTAAA
ACCGAAGTTTATCTACACATCATGCACGAGGTGTTAAAACAGGGTAAACAAGTACTGGTTTTAGTGCCTGAAATTGGTTT
AACCCCTCAAACCATCTCGCGTTTTAAGTCTCGTTTTAATTGTGATATTGCTTTATTGCATTCTGGCTTAAACGACTCCA
AACGTTTACAAGCATGGCAACAAGCACAGACCGGAAAAGCATCTATTATTTTAGGGACACGCTCAGCGATCTATACACCG
CTGCCACGTTTGGGCTTAATCATTTTAGATGAAGAGCATGACCTGTCTTATAAACAGCAAGAAGGCTTCCGTTACCATGC
GCGTGATGTCGCACTATACCGAGGACACTTACAAAGCTGCCCTGTGATTTTAGGTTCGGCAACACCAAGTATTGATAGTT
ATTATTTGGTCGAAACTGGTAAGTTAACTTCACTGCAACTCAACAAACGTGCTGGACATGCACTTTTGCCTAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAGCATGGAATTAGCCAGCCTCTTATTGAACAAATCAAACATACTTTAGCGAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGTTATGCACCTGTACTGGTTTGTGAAAGCTGTGGATGGCAAGCCA
ATTGTCCACATTGTGATGCACATTTTACTTTGCATACCCAGCCTTATTCTTATTTACATTGCCACCACTGTGGAACCATT
CATCGCCTACCAGATCATTGCCCTGAATGTCAGCAAAAGAGCTTAAAAACACTAGGCGCAGGAACAGCTAAGGTCGAAGA
ACACTTACAAGAATTATTTCCAGAGCATGACGTGATTCGGGTTGATCGTGACAGTACCAGTCGTGTCGGAAGCTGGCAAA
AAATCTATGATCGTATTCATCAAAACAAACCAACAATTTTGCTCGGTACGCAAATGTTGGCAAAAGGTCACCATTTCCCA
CATGTGACTTTGGTTGCCATTTTAGATATTGATGCGGGTTTACTCAGCGTAGATATCCGTGCACCAGAACGTACTGCGCA
ATTGATTGTTCAAGTGGCTGGCCGTGCTGGCCGTGGTGAGCATAAAGGCCATGTTTATTTGCAAACATTAAGGCCAGATC
ACCCACTCCTAACCACACTCATCGAAAAAGACTATCGCGCGGTTGCCAAACAAACATTGGCTGAACGTAAAGTTGCTTTG
CTACCGCCTTATCGCTATGCAGTACTCATACGTGCAGAGTCGAAAGATCGAGACTATACCTTGCATTTTTTAAATGAAGC
TGCTGAGCAACTTCGCCAAGTCGCTGGTGAGATTGTTGATATTTGGGGACCTATTCCAGCACCGATGGAACGTAAAGCTG
GGCGGTATCGTGCACACATGGTGATTTTATCTGCCGACCGCGCTCGTCTACATTTTTACTTAAGACAGTGGTGGTCTCAA
TTGGTTCATGCACCAAGGCAGCATCAACTCAGGCTATCAATTGATGTTGATCCGCAAGAATTTAATTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-370)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

95.822

100

0.958