Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   I6J48_RS06490 Genome accession   NZ_CP070518
Coordinates   1386360..1387160 (-) Length   266 a.a.
NCBI ID   WP_205469907.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain FDAARGOS_1218     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1381360..1392160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J48_RS06470 (I6J48_06470) - 1382425..1383123 (-) 699 WP_004641116.1 tetratricopeptide repeat protein -
  I6J48_RS06475 (I6J48_06475) hisS 1383152..1384444 (-) 1293 WP_132070886.1 histidine--tRNA ligase -
  I6J48_RS06480 (I6J48_06480) ispG 1384441..1385556 (-) 1116 WP_004641112.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  I6J48_RS06485 (I6J48_06485) - 1385578..1386369 (-) 792 WP_132070888.1 helix-turn-helix domain-containing protein -
  I6J48_RS06490 (I6J48_06490) pilF 1386360..1387160 (-) 801 WP_205469907.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  I6J48_RS06495 (I6J48_06495) rlmN 1387175..1388410 (-) 1236 WP_132070890.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  I6J48_RS06500 (I6J48_06500) ndk 1388534..1388965 (-) 432 WP_003654870.1 nucleoside-diphosphate kinase -
  I6J48_RS06505 (I6J48_06505) iscX 1389079..1389279 (-) 201 WP_003654869.1 Fe-S cluster assembly protein IscX -
  I6J48_RS06510 (I6J48_06510) - 1389379..1389930 (-) 552 WP_042894811.1 phosphatase PAP2 family protein -
  I6J48_RS06515 (I6J48_06515) - 1389955..1391244 (-) 1290 WP_198079072.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30082.20 Da        Isoelectric Point: 9.0417

>NTDB_id=540471 I6J48_RS06490 WP_205469907.1 1386360..1387160(-) (pilF) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
MSTPKLKTVFCMGVAVALLASGCQTTHTQKKDPEKAVKVRTQLAAEHIRSGDLDSAKRALDQALSVDSRDATANMMMGIL
LQQEGSKSNLEKAEHYFKRAISSEPDNAQAHNNYGTYLYQMERYNDAIEQFRIAGTTLGYDQRYQALENLGRIYLKLGDV
ANAEKTFKQSLLANRDSYISMLELAEIFYLQQQIPAATQMYEQYARTVGQKNQGARALWIGVRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=540471 I6J48_RS06490 WP_205469907.1 1386360..1387160(-) (pilF) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
TTGAGTACTCCAAAGTTAAAAACGGTATTTTGTATGGGGGTTGCAGTTGCGCTTTTGGCAAGTGGTTGCCAGACAACGCA
TACGCAAAAAAAAGACCCAGAAAAAGCGGTAAAGGTGCGTACACAACTTGCTGCTGAACATATCCGTTCGGGTGACTTGG
ATTCGGCAAAGCGAGCTCTTGATCAAGCTTTAAGTGTAGATAGCCGTGATGCAACGGCAAATATGATGATGGGTATTTTA
CTACAGCAAGAAGGTAGTAAGTCGAACTTAGAAAAAGCAGAACATTATTTTAAACGAGCAATTTCATCTGAACCAGATAA
TGCTCAAGCACATAATAACTATGGTACTTATTTATACCAAATGGAACGCTATAATGATGCGATCGAGCAATTTCGTATTG
CTGGCACAACATTAGGTTATGACCAACGCTATCAGGCGTTAGAAAATCTGGGGCGTATTTATTTAAAATTGGGTGATGTT
GCGAATGCTGAAAAAACATTCAAGCAATCACTCCTTGCTAACCGCGACTCTTATATTTCAATGTTAGAGTTAGCGGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAGCAATATGCTCGCACAGTGGGGCAGAAAAATCAGG
GTGCAAGAGCACTTTGGATTGGTGTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTGTTAGTAAACCAA
TTACGTGCCTTGTTCCCAGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_16)

(88-133)

Tetratricopeptide repeat (TPR_16)

(149-205)

Tetratricopeptide repeat (TPR_8)

(39-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

93.985

100

0.94
  pilF Acinetobacter baylyi ADP1

74.615

97.744

0.729