Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   I6J31_RS04580 Genome accession   NZ_CP070515
Coordinates   846790..848580 (+) Length   596 a.a.
NCBI ID   WP_205436001.1    Uniprot ID   -
Organism   Leuconostoc falkenbergense strain FDAARGOS_1201     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 841790..853580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J31_RS04560 (I6J31_04560) - 842020..843414 (+) 1395 WP_233127270.1 ABC transporter substrate-binding protein/permease -
  I6J31_RS04565 (I6J31_04565) - 843411..844157 (+) 747 WP_205435997.1 amino acid ABC transporter ATP-binding protein -
  I6J31_RS04570 (I6J31_04570) - 844212..845663 (+) 1452 WP_205435998.1 ABC transporter substrate-binding protein/permease -
  I6J31_RS04575 (I6J31_04575) - 845711..846484 (+) 774 WP_244138976.1 competence protein CoiA family protein -
  I6J31_RS04580 (I6J31_04580) pepF 846790..848580 (+) 1791 WP_205436001.1 oligoendopeptidase F Regulator
  I6J31_RS04585 (I6J31_04585) - 848638..849030 (+) 393 WP_205436005.1 cytidine deaminase -
  I6J31_RS04590 (I6J31_04590) - 849042..849482 (+) 441 WP_205436006.1 nucleoside 2-deoxyribosyltransferase -
  I6J31_RS04595 (I6J31_04595) - 849482..850411 (+) 930 WP_205436012.1 phosphoglycerate dehydrogenase -
  I6J31_RS04600 (I6J31_04600) - 850475..850843 (+) 369 WP_004915817.1 helix-turn-helix domain-containing protein -
  I6J31_RS04605 (I6J31_04605) pheS 851099..852148 (+) 1050 WP_004915820.1 phenylalanine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 66948.39 Da        Isoelectric Point: 4.4717

>NTDB_id=540452 I6J31_RS04580 WP_205436001.1 846790..848580(+) (pepF) [Leuconostoc falkenbergense strain FDAARGOS_1201]
MAQQILRSEVPENLTWDLSTIFESDDAFEAAFKSVQTAAKQLSQYVGHVGDSATTLLAALEADLAAEREFEKVYVYAHQI
FDQDTTNPKYAAYNAQVQSLYAELSAATSFFQPEVLAIPDATLTQYLAAEGLAKYQHFFDVLLAQKPHTLPADQEALLAG
ASDIFGASEQTFGSLDNSDITFGNVHTETGEVVPLTNGLYSLLLESQNRDLRQEAFTTLYDSYIGLQNTFASTLSAHVKG
HNFLAKTRHYDSARQAAVSGNNIPESVFQTLTTTVDENLPLLHRFVALRKKILGVEDVHSYDLYVPLVDEIDFDVTYEKA
QQIVLSALAPLGADYVAIVQKAFDERWIDVVENKGKRTGAYSSGAYDTKPFILLNWQNNLNNVYTLAHEMGHSVHSYLTR
HNQEYHYGDYPIFLAEIASTTNEGLLTDYLLKTNSDHKFRAYVLNQYLDGFKGTVFRQTQFAEFEQWIHEQSADGTALTA
EVMSDYYGELNQKFYGPDLFPDEAIAYEWSRIPHFYYNFYVYQYATGEAAATTLAERILNGNGAQDYKNYLKSGNSDYAL
NIIQKAGVDMSQSGYLKQAFEVFEARLSELETLLSK

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=540452 I6J31_RS04580 WP_205436001.1 846790..848580(+) (pepF) [Leuconostoc falkenbergense strain FDAARGOS_1201]
ATGGCACAACAAATACTACGTTCTGAAGTTCCTGAAAATTTAACATGGGATCTCAGCACAATTTTTGAATCAGATGATGC
ATTTGAAGCGGCCTTTAAGTCAGTTCAAACAGCAGCAAAACAATTAAGTCAATATGTTGGGCACGTTGGTGATTCAGCTA
CTACATTGCTGGCTGCATTAGAAGCGGACCTTGCAGCTGAACGCGAATTTGAAAAAGTGTATGTCTATGCACACCAGATT
TTTGATCAAGACACTACTAATCCTAAATATGCGGCTTATAATGCACAAGTTCAGAGTTTATATGCTGAGTTGAGCGCAGC
AACGTCGTTTTTTCAACCAGAAGTCTTAGCTATTCCTGATGCGACTTTGACTCAATATCTTGCTGCAGAGGGATTGGCAA
AGTATCAACATTTCTTTGATGTTTTACTTGCTCAAAAGCCTCATACGTTGCCCGCTGATCAAGAAGCGCTCTTAGCAGGT
GCGAGTGACATTTTTGGCGCATCCGAGCAAACTTTTGGTTCGCTTGACAATTCCGATATTACATTTGGTAATGTTCATAC
TGAGACCGGAGAAGTAGTGCCATTAACAAATGGTTTATATTCACTCTTGTTAGAATCTCAAAATCGTGATTTGCGCCAAG
AAGCTTTTACAACCCTATATGATAGTTACATTGGATTACAAAACACATTTGCGTCAACACTTTCTGCTCACGTTAAGGGA
CACAATTTTTTGGCCAAAACTCGCCACTATGATTCAGCGCGCCAAGCTGCTGTTTCAGGAAATAATATCCCTGAAAGTGT
TTTTCAAACATTAACGACAACTGTGGATGAAAACTTACCATTATTGCATCGATTTGTTGCTTTACGAAAAAAAATTCTGG
GTGTAGAAGATGTGCATTCTTATGACTTGTACGTGCCATTGGTTGATGAAATTGACTTTGATGTAACCTATGAAAAGGCC
CAACAAATTGTCTTATCAGCATTGGCACCGTTAGGGGCAGATTATGTTGCCATTGTTCAAAAAGCATTTGACGAACGATG
GATTGATGTTGTCGAAAATAAAGGTAAGCGTACTGGTGCTTATTCAAGTGGTGCTTACGACACTAAGCCATTCATTCTGT
TGAATTGGCAAAATAATTTGAATAATGTCTACACTTTGGCGCATGAAATGGGACATTCCGTTCATTCTTATTTAACACGG
CATAACCAAGAGTACCATTATGGTGATTATCCTATCTTTTTGGCAGAAATCGCCTCAACAACTAATGAAGGGTTGTTGAC
GGACTATTTGCTTAAGACCAATAGTGATCATAAATTCCGTGCTTATGTTTTGAACCAATACTTAGATGGCTTCAAGGGAA
CGGTATTTCGCCAAACTCAGTTTGCGGAATTTGAACAATGGATCCACGAACAAAGTGCTGATGGAACGGCTTTAACTGCT
GAAGTCATGAGTGATTATTATGGTGAGTTGAATCAAAAGTTCTATGGACCAGATCTTTTCCCTGACGAAGCTATTGCTTA
TGAATGGTCTCGTATTCCTCACTTTTATTATAATTTCTATGTTTATCAGTATGCTACTGGTGAAGCTGCCGCAACAACTT
TGGCAGAACGTATCTTGAATGGCAACGGTGCTCAAGACTATAAAAACTATTTAAAGTCGGGTAATTCAGATTATGCGTTG
AATATTATTCAAAAAGCAGGCGTCGACATGAGTCAATCTGGCTATTTAAAACAAGCCTTTGAAGTGTTTGAAGCACGTTT
GTCTGAATTAGAAACATTGCTATCCAAGTAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-581)

Oligopeptidase F (Peptidase_M3_N)

(114-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.602

99.497

0.513