Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6J31_RS02035 Genome accession   NZ_CP070515
Coordinates   342761..344128 (-) Length   455 a.a.
NCBI ID   WP_205436071.1    Uniprot ID   -
Organism   Leuconostoc falkenbergense strain FDAARGOS_1201     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 337761..349128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J31_RS02020 (I6J31_02020) gltX 339078..340574 (-) 1497 WP_205435559.1 glutamate--tRNA ligase -
  I6J31_RS02025 (I6J31_02025) - 340672..341259 (-) 588 WP_205435560.1 TetR/AcrR family transcriptional regulator -
  I6J31_RS09955 - 341390..342163 (+) 774 WP_244138947.1 ABC transporter permease -
  I6J31_RS09960 - 342197..342628 (+) 432 WP_244138948.1 hypothetical protein -
  I6J31_RS02035 (I6J31_02035) radA 342761..344128 (-) 1368 WP_205436071.1 DNA repair protein RadA Machinery gene
  I6J31_RS02040 (I6J31_02040) - 344131..344991 (-) 861 WP_205435561.1 metallophosphoesterase family protein -
  I6J31_RS02045 (I6J31_02045) - 345164..345706 (-) 543 WP_010276038.1 deoxyuridine 5'-triphosphate nucleotidohydrolase -
  I6J31_RS02050 (I6J31_02050) - 345827..346108 (+) 282 WP_004910985.1 GNAT family N-acetyltransferase -
  I6J31_RS02055 (I6J31_02055) rpiA 346105..346791 (+) 687 WP_004910982.1 ribose-5-phosphate isomerase RpiA -
  I6J31_RS02060 (I6J31_02060) - 346910..347833 (+) 924 WP_004914844.1 IS30 family transposase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49165.53 Da        Isoelectric Point: 6.5175

>NTDB_id=540442 I6J31_RS02035 WP_205436071.1 342761..344128(-) (radA) [Leuconostoc falkenbergense strain FDAARGOS_1201]
MAKVKTQFICTNCGFVSARYLGRCSNCGEWGTLVEEKIQPETNDRKSRVSLDGRTAKVEKINEVTSEATPRVATQLKELN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSRQLAQAGRVLYVTGEESATQVKLRADRLGVGHDEFYLYPETDMTAIKKQ
IESLQPDFVVIDSVQTMQEPDITSAIGSVSQIREVTADLLQIAKTNNISIFIVGHVTKDGAIAGPKILEHMVDTVLYFEG
DSHYKYRILRAVKNRFGATNELGIFEMRDGGLIEVANPSEIFLEERLAGATGSAIVVALEGSRPILVELQALVTPTVFGN
AQRTAAGLDRNRVSLIMAVLEKRANLLLQNQDAYLKAAGGVKLDEPAIDLAIAIAIASSYYDKESQSSDVFIGEIGLTGE
VRSVADIEGRLKEAKKLGFKRAIVPKNNLNGITKPRDIQIVGVATLSEALKIALG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=540442 I6J31_RS02035 WP_205436071.1 342761..344128(-) (radA) [Leuconostoc falkenbergense strain FDAARGOS_1201]
ATCGCTAAAGTTAAAACGCAATTTATATGTACCAATTGTGGGTTTGTATCAGCTCGTTATCTTGGGCGTTGCTCGAATTG
TGGTGAGTGGGGGACATTAGTTGAAGAAAAAATTCAACCAGAAACCAATGATCGCAAGAGCCGTGTCAGCCTTGATGGTC
GAACGGCCAAAGTTGAAAAAATTAACGAAGTGACTTCTGAGGCGACCCCACGGGTGGCAACGCAACTAAAGGAGTTAAAT
CGTGTCCTTGGTGGTGGTGTCGTACCGGGATCAATGGTACTGATTGGTGGCGATCCGGGTATTGGTAAATCAACGTTATT
GCTACAAGTTTCAAGGCAATTGGCGCAAGCGGGTCGTGTTTTGTATGTAACCGGTGAAGAATCTGCGACCCAAGTTAAAT
TGCGCGCTGATCGCTTGGGCGTTGGGCATGACGAATTTTACCTTTATCCGGAAACGGATATGACGGCTATCAAAAAACAA
ATTGAAAGTTTACAGCCGGATTTTGTGGTGATTGATTCGGTTCAAACGATGCAAGAGCCAGATATCACGTCTGCCATTGG
CTCAGTCTCACAAATTCGTGAGGTAACGGCTGATTTGCTGCAAATTGCCAAGACTAATAATATTTCCATCTTTATCGTCG
GTCATGTGACCAAAGATGGTGCTATTGCGGGACCCAAGATTTTGGAACACATGGTGGACACGGTATTATATTTTGAAGGT
GATAGTCACTACAAATACCGTATTCTACGTGCTGTCAAAAATCGTTTTGGGGCGACTAACGAATTAGGCATTTTTGAAAT
GCGTGATGGCGGGTTAATTGAGGTTGCTAATCCTTCTGAAATTTTCCTTGAGGAGCGTTTGGCTGGTGCAACCGGATCGG
CCATCGTGGTGGCGTTAGAAGGGTCACGCCCAATTTTGGTTGAGCTGCAAGCTTTGGTCACACCGACTGTATTTGGAAAT
GCGCAACGGACCGCGGCTGGATTAGATCGTAACCGTGTGTCACTTATTATGGCTGTACTTGAGAAACGTGCTAATTTGCT
ATTGCAGAATCAAGATGCCTATTTAAAAGCGGCTGGGGGCGTCAAACTTGATGAGCCAGCCATTGATTTGGCAATTGCAA
TTGCGATTGCGAGTTCTTACTATGATAAAGAGTCACAATCTAGTGATGTATTTATTGGTGAAATTGGTTTGACTGGTGAA
GTGCGCAGTGTTGCTGATATTGAAGGGCGTTTAAAGGAAGCAAAAAAGCTTGGCTTCAAACGCGCAATTGTACCAAAAAA
CAATTTAAATGGCATTACCAAGCCACGTGATATTCAAATCGTTGGCGTCGCAACCTTGAGCGAAGCGCTTAAAATTGCGC
TAGGGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(70-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

66.519

99.121

0.659
  radA Streptococcus pneumoniae Rx1

66.519

99.121

0.659
  radA Streptococcus pneumoniae D39

66.519

99.121

0.659
  radA Streptococcus pneumoniae R6

66.519

99.121

0.659
  radA Streptococcus pneumoniae TIGR4

66.519

99.121

0.659
  radA Streptococcus mitis SK321

66.519

99.121

0.659
  radA Bacillus subtilis subsp. subtilis str. 168

62.801

100

0.631