Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   JTI59_RS15635 Genome accession   NZ_CP070511
Coordinates   3058946..3060760 (-) Length   604 a.a.
NCBI ID   WP_012749453.1    Uniprot ID   -
Organism   Parageobacillus toebii strain NEB718     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3053946..3065760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTI59_RS15600 (JTI59_15600) - 3054741..3055373 (-) 633 WP_012749460.1 GTP pyrophosphokinase -
  JTI59_RS15605 (JTI59_15605) - 3055391..3055765 (-) 375 WP_205423995.1 hypothetical protein -
  JTI59_RS15610 (JTI59_15610) - 3055894..3056487 (+) 594 WP_062753735.1 CYTH domain-containing protein -
  JTI59_RS15615 (JTI59_15615) - 3056484..3057074 (+) 591 WP_062753737.1 lytic transglycosylase domain-containing protein -
  JTI59_RS15620 (JTI59_15620) - 3057169..3057582 (+) 414 WP_012749456.1 globin -
  JTI59_RS15625 (JTI59_15625) spxH 3057575..3058468 (+) 894 WP_205423996.1 ClpXP adapter protein SpxH -
  JTI59_RS15630 (JTI59_15630) - 3058730..3058927 (+) 198 WP_062753739.1 hypothetical protein -
  JTI59_RS15635 (JTI59_15635) pepF 3058946..3060760 (-) 1815 WP_012749453.1 oligoendopeptidase F Regulator
  JTI59_RS15640 (JTI59_15640) - 3060858..3062105 (-) 1248 WP_240345827.1 competence protein CoiA -
  JTI59_RS15645 (JTI59_15645) cls 3062216..3063724 (-) 1509 WP_012749451.1 cardiolipin synthase -
  JTI59_RS15650 (JTI59_15650) mecA 3063798..3064484 (-) 687 WP_062753743.1 adaptor protein MecA -
  JTI59_RS15655 (JTI59_15655) - 3064700..3065371 (+) 672 WP_012749449.1 TerC family protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69946.92 Da        Isoelectric Point: 4.9652

>NTDB_id=540429 JTI59_RS15635 WP_012749453.1 3058946..3060760(-) (pepF) [Parageobacillus toebii strain NEB718]
MEEKKTKKSLPSRSEIPVEETWRLEDIFPTDEAWEQEFQAVKKMIPKLSDYQGRLGESADTLYEALQYQDEISMRLGKLY
TYAHMRYDQDTTNAFYQGLNDRATSLYSEASSAMAFIVPEILAIDEAKLRSFLEEKKELKLYEHALDEINRQRPHVLSAE
EEALLAQAAEVMQASSTTFGMLNNADLTFPTIIDENGEEVEVTHGRFIRFLESTDRRVRRDAFKAVYDTYEKYKNTFAST
LAGAVKKDNFFARVRRYKSAREAALSSNNIPESVYDNLIETVHEHLPLLHRYVRLRKKALGLDELHMYDLYTPLVQDVKM
EVTYEEAKEYMLKGLAPLGEEYIGIVKEGLENRWVDVRENKGKRSGAYSSGSYGTNPYILLNWQDNVHNLFTLVHEFGHS
VHSYYTRKTQPYPYGDYSIFVAEVASTCNEALLSDYLLKTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHMIHMKAQ
EGEALTADSLTSMYYELNKKYFGDDIVVDKEIGLEWARIPHFYYNYYVYQYATGFSAATALSRQILEEGEPAVKRYIEFL
KAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLDEMEQMLS

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=540429 JTI59_RS15635 WP_012749453.1 3058946..3060760(-) (pepF) [Parageobacillus toebii strain NEB718]
ATGGAAGAAAAGAAAACAAAAAAATCGTTGCCATCACGAAGTGAAATTCCTGTAGAAGAAACATGGCGTTTAGAGGACAT
TTTCCCAACGGATGAAGCATGGGAGCAAGAATTCCAAGCAGTGAAAAAAATGATTCCGAAATTATCGGACTATCAAGGGC
GGTTGGGAGAATCAGCAGATACGTTATACGAAGCGCTGCAATATCAAGATGAGATATCGATGCGTCTCGGCAAGCTATAT
ACATATGCGCATATGCGTTACGACCAAGATACGACAAATGCCTTTTATCAAGGACTTAATGACCGTGCTACCAGCCTTTA
TAGCGAAGCGTCTAGTGCGATGGCGTTTATCGTTCCGGAAATTTTAGCGATCGATGAGGCGAAGTTGCGTTCATTTTTAG
AAGAGAAAAAAGAATTAAAGCTGTATGAACACGCTTTAGACGAAATTAACCGTCAGCGTCCGCATGTATTGTCTGCCGAG
GAGGAGGCTCTCCTTGCCCAAGCTGCGGAAGTCATGCAAGCATCTTCGACTACATTTGGCATGCTGAATAATGCGGATTT
AACATTCCCAACGATTATTGATGAAAATGGGGAAGAAGTGGAAGTGACACATGGCCGTTTTATTCGCTTTTTGGAAAGCA
CAGACCGCCGTGTGCGGCGCGATGCGTTTAAAGCGGTATATGATACGTACGAAAAGTACAAGAATACGTTTGCTAGCACT
CTCGCCGGAGCGGTGAAAAAAGATAACTTTTTTGCCCGCGTTCGCCGTTATAAATCAGCACGGGAAGCGGCATTAAGCAG
CAATAATATTCCTGAAAGTGTTTACGATAATTTGATCGAAACGGTTCATGAACATTTGCCGCTGTTGCACCGTTATGTCC
GTTTACGCAAAAAAGCGCTTGGACTTGACGAACTTCATATGTATGATTTATATACTCCGCTTGTGCAAGATGTAAAAATG
GAAGTAACGTATGAAGAAGCGAAAGAATACATGTTAAAAGGGCTTGCTCCGCTCGGTGAAGAATATATTGGCATCGTCAA
AGAGGGCCTCGAAAACCGATGGGTAGATGTGCGCGAAAATAAAGGGAAACGAAGCGGTGCCTATTCATCAGGTTCATATG
GAACAAATCCATATATTTTGCTTAACTGGCAAGATAACGTCCATAATTTGTTTACGTTAGTCCACGAATTTGGCCACTCT
GTGCATAGTTATTACACACGCAAAACGCAGCCGTATCCGTATGGAGATTATTCCATTTTTGTTGCTGAAGTTGCATCGAC
ATGCAACGAAGCGCTATTAAGTGATTATTTATTAAAAACGATCGATGATGAGAAAAAACGATTATATTTACTTAACCATT
ATTTAGAAGGGTTCCGTGGCACGGTCTTTCGGCAAACGATGTTTGCAGAGTTTGAACATATGATCCATATGAAGGCGCAG
GAAGGCGAAGCGTTAACAGCTGATTCATTGACTTCCATGTATTACGAATTAAACAAAAAATATTTCGGTGATGATATTGT
CGTCGATAAGGAAATTGGATTAGAATGGGCGCGGATTCCACATTTTTATTACAATTATTATGTTTATCAATATGCCACAG
GGTTTAGCGCAGCCACCGCATTAAGCAGACAAATATTAGAAGAAGGGGAACCGGCTGTTAAACGCTATATTGAGTTTTTA
AAAGCAGGCAGCTCCGATTATCCAATTGAGGTGTTGAAAAAAGCGGGAGTAGATATGACGAGCGCGGAACCGATCCGGCA
GGCTTGTCAAGTATTCGCAGAAAAACTAGATGAAATGGAACAGATGTTATCGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.182

98.013

0.502