Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JTI59_RS07820 Genome accession   NZ_CP070511
Coordinates   1533367..1535088 (+) Length   573 a.a.
NCBI ID   WP_062752869.1    Uniprot ID   A0A6G9J5X9
Organism   Parageobacillus toebii strain NEB718     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1528367..1540088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTI59_RS07795 (JTI59_07795) - 1528756..1528989 (+) 234 WP_062752874.1 exodeoxyribonuclease VII small subunit -
  JTI59_RS07800 (JTI59_07800) - 1528992..1529885 (+) 894 WP_015864441.1 polyprenyl synthetase family protein -
  JTI59_RS07805 (JTI59_07805) dxs 1530102..1531994 (+) 1893 WP_062752872.1 1-deoxy-D-xylulose-5-phosphate synthase -
  JTI59_RS07810 (JTI59_07810) - 1531998..1532831 (+) 834 WP_205424581.1 TlyA family RNA methyltransferase -
  JTI59_RS07815 (JTI59_07815) ahrC 1532898..1533347 (+) 450 WP_015864438.1 transcriptional regulator AhrC/ArgR -
  JTI59_RS07820 (JTI59_07820) recN 1533367..1535088 (+) 1722 WP_062752869.1 DNA repair protein RecN Machinery gene
  JTI59_RS07825 (JTI59_07825) spoIVB 1535214..1536506 (+) 1293 WP_015864436.1 SpoIVB peptidase -
  JTI59_RS07830 (JTI59_07830) spo0A 1536820..1537599 (+) 780 WP_089097906.1 sporulation transcription factor Spo0A -
  JTI59_RS07835 (JTI59_07835) - 1537651..1537797 (-) 147 WP_015864434.1 YycC family protein -
  JTI59_RS07840 (JTI59_07840) - 1537907..1538641 (+) 735 WP_062678703.1 glycerophosphodiester phosphodiesterase -
  JTI59_RS07845 (JTI59_07845) - 1538655..1538903 (-) 249 WP_015864432.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 64825.99 Da        Isoelectric Point: 4.8936

>NTDB_id=540421 JTI59_RS07820 WP_062752869.1 1533367..1535088(+) (recN) [Parageobacillus toebii strain NEB718]
MLAELSIKNFAIIESLSISFEKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRYGEDKAEIEGLFLLDNENHPCYDK
CAEVGIDISEGMVVLRREIFATGKSVCRVNGKLVTTAILRDIGSTLVDIHGQHEHQELMNPSRHLPLLDEYGGAEIAEAL
EEYRAVYEKYEQLRKKLKKLNENEQQMAHRLDLLTFQLDEIQKANLQPNEDEQLMEEKVKIMNFQKIYEALKHSYEALSG
EQRGLDWIGLAMSHLDDVASIDPALKEAYETIANSYYLLEDITYKLRDELEQLEYDPARLDFIESRLSEINQLKRKYGST
IEDILQYAEKITEEIDTIQHRETHIHELQKELKSVTEDLLIEAKNVTNVRKKYAKTLINHIHQELKELYMEKTQFDIVFT
KREGSLDAPLLDGVPVKFHEDGVDDVEFYISTNVGEPLKPLAKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYRISIDSQVLCISHLPQVAAMADTHLFIAKETDGSRTRTSVKELSDEEKVKEIGRMISGVEITELTKKH
AKELLELATKIKG

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=540421 JTI59_RS07820 WP_062752869.1 1533367..1535088(+) (recN) [Parageobacillus toebii strain NEB718]
TTGCTAGCGGAATTATCCATAAAAAATTTTGCGATTATTGAATCATTGTCCATTTCGTTTGAAAAAGGACTGACGGTGTT
AACTGGGGAAACGGGAGCGGGAAAGTCGATTATTATTGATGCGATCCATCTGCTGATCGGAGGACGGGGTTCGGCAGAAT
TTGTCCGCTACGGAGAAGACAAGGCGGAAATAGAAGGACTTTTTTTACTAGATAATGAAAACCATCCATGTTATGACAAA
TGTGCCGAAGTCGGCATTGACATTAGCGAAGGCATGGTTGTTTTGCGCCGTGAAATTTTCGCAACTGGAAAAAGCGTATG
CCGCGTAAACGGAAAATTAGTGACGACGGCTATATTGCGCGATATCGGTTCTACGCTTGTCGATATTCATGGGCAACATG
AACATCAAGAATTAATGAATCCATCTCGGCATCTTCCGCTACTTGATGAATACGGCGGGGCGGAAATTGCGGAGGCTCTT
GAGGAATATCGCGCCGTTTATGAGAAGTATGAACAATTGCGGAAGAAACTAAAAAAGCTAAATGAAAATGAGCAGCAAAT
GGCGCATCGCCTTGATTTATTAACATTTCAGCTAGATGAAATTCAAAAAGCGAATTTACAGCCAAACGAAGATGAACAGT
TGATGGAAGAAAAAGTAAAAATTATGAACTTCCAAAAGATTTACGAAGCGCTTAAACATAGTTATGAGGCATTATCCGGC
GAGCAGCGCGGTCTTGACTGGATTGGTTTGGCAATGAGCCATTTAGATGATGTCGCTTCTATTGACCCGGCATTAAAAGA
AGCGTATGAAACGATTGCGAATAGTTATTATTTATTGGAGGATATTACGTATAAATTACGCGATGAACTCGAACAATTGG
AATATGATCCAGCCCGCCTTGATTTTATTGAAAGCCGCCTTAGTGAAATCAATCAATTAAAACGAAAATACGGATCGACC
ATCGAAGATATTTTGCAATATGCAGAAAAAATTACAGAAGAAATCGATACGATTCAACATCGCGAAACCCATATTCACGA
ACTGCAAAAAGAATTGAAATCGGTGACGGAAGATTTATTAATCGAAGCGAAAAATGTGACGAATGTTCGCAAAAAGTACG
CGAAAACATTAATTAACCATATTCATCAAGAATTAAAAGAGCTGTATATGGAAAAAACACAATTTGATATCGTATTTACG
AAACGAGAAGGATCGCTTGATGCACCGCTGCTTGATGGTGTACCAGTGAAATTTCATGAAGATGGTGTCGATGATGTGGA
ATTTTATATTTCCACAAACGTTGGCGAACCGTTAAAACCGTTAGCGAAAATTGCCTCTGGCGGGGAATTGTCGCGCATCA
TGCTTGCATTAAAAAGCATATTTTCCAAACATCAAGGAGTTACATCGATTATTTTTGATGAAGTCGATACGGGGGTTAGC
GGCCGGGTTGCACAGGCGATTGCCGAAAAAATTTACCGCATCTCCATCGATTCGCAAGTGCTTTGCATTTCCCACCTGCC
GCAAGTAGCGGCGATGGCTGATACGCATTTGTTTATTGCGAAAGAAACAGATGGAAGCCGCACAAGAACGTCAGTCAAAG
AATTATCGGACGAAGAAAAAGTAAAGGAAATCGGCCGGATGATTTCTGGTGTAGAAATTACAGAACTGACGAAAAAACAT
GCAAAAGAGTTGCTTGAGCTAGCAACAAAAATCAAAGGATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G9J5X9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

64.286

100

0.644