Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   JTI59_RS07570 Genome accession   NZ_CP070511
Coordinates   1491994..1492290 (+) Length   98 a.a.
NCBI ID   WP_015864482.1    Uniprot ID   A0A6G9J654
Organism   Parageobacillus toebii strain NEB718     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1486994..1497290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTI59_RS07545 (JTI59_07545) - 1487307..1488440 (+) 1134 WP_420830752.1 class I SAM-dependent methyltransferase -
  JTI59_RS07550 (JTI59_07550) - 1488489..1488731 (-) 243 WP_008879854.1 DUF2626 family protein -
  JTI59_RS07555 (JTI59_07555) - 1488916..1489614 (-) 699 WP_205424573.1 helix-turn-helix transcriptional regulator -
  JTI59_RS07560 (JTI59_07560) comGA 1489815..1490861 (+) 1047 WP_089097914.1 competence type IV pilus ATPase ComGA Machinery gene
  JTI59_RS07565 (JTI59_07565) comGB 1490954..1491979 (+) 1026 WP_097354745.1 competence type IV pilus assembly protein ComGB -
  JTI59_RS07570 (JTI59_07570) comGC 1491994..1492290 (+) 297 WP_015864482.1 competence type IV pilus major pilin ComGC Machinery gene
  JTI59_RS07575 (JTI59_07575) comGD 1492274..1492717 (+) 444 WP_015864481.1 competence type IV pilus minor pilin ComGD -
  JTI59_RS07580 (JTI59_07580) comGE 1492701..1493024 (+) 324 WP_015864480.1 competence type IV pilus minor pilin ComGE -
  JTI59_RS07585 (JTI59_07585) comGF 1493021..1493443 (+) 423 WP_015864479.1 competence type IV pilus minor pilin ComGF -
  JTI59_RS07590 (JTI59_07590) comGG 1493460..1493846 (+) 387 WP_015864478.1 competence type IV pilus minor pilin ComGG -
  JTI59_RS07595 (JTI59_07595) - 1494041..1494220 (+) 180 WP_015864477.1 YqzE family protein -
  JTI59_RS07600 (JTI59_07600) - 1494281..1495072 (-) 792 WP_015864476.1 YqhG family protein -
  JTI59_RS07605 (JTI59_07605) - 1495059..1496726 (-) 1668 WP_205424574.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10889.74 Da        Isoelectric Point: 6.8588

>NTDB_id=540420 JTI59_RS07570 WP_015864482.1 1491994..1492290(+) (comGC) [Parageobacillus toebii strain NEB718]
MNEKGFTLIEMLIVLMVISILLLIVIPNITKHNGMINNKGCEAFVNTVQAQVKAYEMEHKQIPTIQQLIDGKYIKSDHCP
NGHKIQINSNGEVSESGA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=540420 JTI59_RS07570 WP_015864482.1 1491994..1492290(+) (comGC) [Parageobacillus toebii strain NEB718]
ATGAATGAAAAAGGGTTTACGTTAATCGAAATGTTAATTGTATTAATGGTTATTTCTATTTTATTGCTTATTGTCATTCC
AAATATAACGAAACACAATGGAATGATTAATAACAAAGGATGTGAAGCGTTTGTGAACACCGTCCAAGCCCAAGTGAAGG
CATATGAAATGGAACATAAACAAATTCCGACAATACAGCAGCTTATTGATGGAAAGTATATTAAGTCAGACCATTGTCCA
AACGGACATAAAATTCAAATTAATAGCAACGGGGAAGTAAGTGAAAGTGGCGCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G9J654

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

57.895

96.939

0.561
  comGC Staphylococcus aureus MW2

45.161

94.898

0.429
  comGC Staphylococcus aureus N315

45.161

94.898

0.429