Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   BN115_RS23245 Genome accession   NC_018829
Coordinates   4986400..4987839 (-) Length   479 a.a.
NCBI ID   WP_015042043.1    Uniprot ID   -
Organism   Bordetella bronchiseptica MO149     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4981400..4992839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN115_RS23220 (BBMO149_4574) - 4982482..4983165 (+) 684 WP_003815897.1 hypothetical protein -
  BN115_RS23225 (BBMO149_4575) bfr 4983247..4983723 (-) 477 WP_003815898.1 bacterioferritin -
  BN115_RS23230 (BBMO149_4576) - 4984062..4984991 (-) 930 WP_015042041.1 DMT family transporter -
  BN115_RS23235 (BBMO149_4577) - 4985099..4985977 (+) 879 WP_015042042.1 LysR substrate-binding domain-containing protein -
  BN115_RS23240 (BBMO149_4578) - 4986005..4986307 (-) 303 WP_003815905.1 bacterioferritin-associated ferredoxin -
  BN115_RS23245 (BBMO149_4579) rpoN/rpoN1 4986400..4987839 (-) 1440 WP_015042043.1 RNA polymerase factor sigma-54 Machinery gene
  BN115_RS23250 (BBMO149_4580) - 4987838..4988485 (+) 648 WP_003815907.1 hypothetical protein -
  BN115_RS23255 (BBMO149_4581) leuA 4988912..4990618 (+) 1707 WP_003818182.1 2-isopropylmalate synthase -
  BN115_RS23260 (BBMO149_4582) - 4990670..4991953 (-) 1284 WP_004565898.1 amidase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 52350.56 Da        Isoelectric Point: 4.8131

>NTDB_id=54040 BN115_RS23245 WP_015042043.1 4986400..4987839(-) (rpoN/rpoN1) [Bordetella bronchiseptica MO149]
MQNIVPMTRPALELRPGQHLTLTPQLQQSIRLLQLSSLELEAELSQALAENPLLERDEDPAREEQADPEREASVEADEAP
DTELRLDEMPGSGGVHPDDDSDLPQAARPDTLREHLLGQLALTRAAPRDVALCGLLIDELDENGYLDSPLEEILTWLPAE
AQADLDELRAALALLQSFDPAGIGARDMAECLQLQLRQPDPARLPEAADAEVLVCARRICAQHLPLLATGNVARVREAVQ
CDEAVVRAAHALILRLEPRPGRAWTVPAADYAIPDVIVRRTRQGWQAVLNSAVVPRLHVNAVYAQVLGGQRQGGNAGLQA
QLQQARWMIRNVEQRFDTILRVAQAIVAHQQAFFSQGPAAMRPLILKDIAGELDLHESTISRATTQKYMLTPFGTLELKR
FFGAGVATDGGDATSATAVQAVIRQLVADEDRGKPLSDSQIMQRLADQGIVIARRTVAKYREALRIAPATLRKAQAAGR

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=54040 BN115_RS23245 WP_015042043.1 4986400..4987839(-) (rpoN/rpoN1) [Bordetella bronchiseptica MO149]
ATGCAAAATATTGTACCTATGACTCGTCCCGCGCTAGAACTTCGTCCTGGTCAACATTTGACGTTGACCCCTCAACTGCA
ACAGTCGATCCGGCTGTTGCAGCTGTCGTCGCTGGAGCTGGAGGCCGAACTGTCGCAGGCGCTGGCCGAGAATCCGTTGC
TGGAACGCGACGAAGATCCGGCGCGCGAGGAGCAGGCCGACCCCGAGCGCGAGGCCTCGGTCGAGGCCGACGAGGCGCCG
GATACCGAACTGCGCCTGGACGAGATGCCCGGTTCGGGCGGCGTCCATCCCGACGACGACAGCGACCTGCCGCAGGCGGC
GCGCCCGGACACCCTGCGCGAGCATCTGCTGGGGCAGCTGGCGCTGACGCGCGCCGCCCCGCGCGATGTGGCGCTGTGCG
GTCTGCTGATCGACGAACTGGACGAGAACGGCTACCTGGATTCGCCCCTGGAAGAGATCCTGACATGGCTGCCGGCCGAG
GCGCAGGCCGACCTGGACGAGCTGCGCGCGGCGCTGGCATTGCTGCAGTCGTTCGATCCGGCAGGCATCGGCGCGCGCGA
CATGGCCGAATGCCTGCAGCTGCAGTTGCGCCAGCCCGATCCGGCGCGCCTGCCCGAGGCGGCCGATGCCGAGGTGCTGG
TCTGTGCGCGGCGCATCTGTGCGCAGCATCTGCCCTTGCTGGCCACTGGCAACGTGGCCCGCGTGCGCGAGGCCGTGCAA
TGCGACGAGGCGGTCGTGCGCGCCGCGCACGCGCTGATCCTGCGCCTGGAGCCCCGGCCGGGCCGTGCCTGGACGGTGCC
GGCGGCCGATTACGCCATTCCCGACGTGATCGTGCGCCGCACCCGCCAGGGCTGGCAGGCGGTGCTCAACAGCGCTGTCG
TGCCGCGGCTGCACGTCAATGCCGTCTATGCGCAAGTGCTGGGCGGCCAGCGCCAGGGCGGCAACGCCGGCCTGCAGGCG
CAGTTGCAGCAGGCGCGCTGGATGATCCGCAACGTGGAGCAGCGCTTCGACACCATCCTGCGCGTGGCCCAGGCGATCGT
GGCGCATCAGCAGGCGTTCTTCAGCCAGGGGCCGGCGGCCATGCGGCCGTTGATCCTCAAGGACATCGCCGGCGAACTGG
ATCTGCACGAATCGACCATTTCACGGGCGACGACGCAGAAGTACATGCTCACACCGTTCGGCACGCTGGAGCTCAAGCGC
TTCTTCGGCGCGGGCGTGGCCACCGACGGCGGCGACGCCACCTCGGCCACCGCGGTGCAGGCGGTGATCCGCCAGCTGGT
GGCCGACGAGGATCGCGGCAAGCCCTTGTCGGACAGCCAGATCATGCAGCGCCTGGCCGACCAGGGCATCGTCATCGCTC
GCCGCACGGTGGCCAAGTACCGCGAGGCGCTGCGTATCGCGCCCGCGACGCTACGCAAGGCCCAGGCGGCGGGTCGTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(318-473)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(106-303)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

48.221

100

0.509

Multiple sequence alignment