Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JTI59_RS01935 Genome accession   NZ_CP070511
Coordinates   376749..378122 (-) Length   457 a.a.
NCBI ID   WP_205424254.1    Uniprot ID   -
Organism   Parageobacillus toebii strain NEB718     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 371749..383122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTI59_RS01910 (JTI59_01910) cysE 371769..372425 (-) 657 WP_205424253.1 serine O-acetyltransferase -
  JTI59_RS01915 (JTI59_01915) gltX 372765..374225 (-) 1461 WP_062677078.1 glutamate--tRNA ligase -
  JTI59_RS01920 (JTI59_01920) ispF 374340..374816 (-) 477 WP_062677077.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  JTI59_RS01925 (JTI59_01925) ispD 374833..375519 (-) 687 WP_062756072.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  JTI59_RS01930 (JTI59_01930) - 375543..376637 (-) 1095 WP_081189181.1 PIN/TRAM domain-containing protein -
  JTI59_RS01935 (JTI59_01935) radA 376749..378122 (-) 1374 WP_205424254.1 DNA repair protein RadA Machinery gene
  JTI59_RS01940 (JTI59_01940) clpC 378209..380644 (-) 2436 WP_062756076.1 ATP-dependent protease ATP-binding subunit ClpC -
  JTI59_RS01945 (JTI59_01945) - 380644..381732 (-) 1089 WP_012748856.1 protein arginine kinase -
  JTI59_RS18270 (JTI59_01950) - 381778..382170 (-) 393 Protein_362 UvrB/UvrC motif-containing protein -
  JTI59_RS01955 (JTI59_01955) - 382298..382759 (-) 462 WP_012748854.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49948.62 Da        Isoelectric Point: 7.4850

>NTDB_id=540392 JTI59_RS01935 WP_205424254.1 376749..378122(-) (radA) [Parageobacillus toebii strain NEB718]
MGKKKTKFVCQECGYESAKWLGRCPGCSTWNSMVEEIERTKPMTRGVFVHSTDDIISKPVPITTVTTTQEPRIQTNISEF
NRVLGGGIVKGSLVLIGGDPGIGKSTLLLQVSAQLAAMQHKVLYISGEESVKQTKLRADRLHIASDQLYVLAETDLEYIA
EAIENVRPACVVIDSIQTIYRADITSAPGSVSQVRECTAELMKIAKTKGIAIFIVGHVTKEGAIAGPRILEHMVDTVLYF
EGERHHTYRILRAVKNRFGSTNEIGIFEMRDSGLIEVENPSEVFLEERSRGAAGSTVVAAMEGTRPVLVEIQALVSPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIVVSIASSFRDQPTNPSDVIIGEVGLT
GEVRRVSRIEQRVQEAVKLGFSRIIIPKNNLAGWNPPKHITVIGVSHVAEALEHTLQ

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=540392 JTI59_RS01935 WP_205424254.1 376749..378122(-) (radA) [Parageobacillus toebii strain NEB718]
ATGGGGAAAAAGAAAACAAAGTTTGTTTGTCAAGAATGCGGTTATGAATCAGCGAAATGGCTTGGAAGATGTCCAGGATG
CAGTACATGGAATTCGATGGTCGAGGAAATTGAGCGGACAAAGCCAATGACAAGAGGAGTGTTTGTGCATTCCACGGATG
ATATCATCTCAAAACCAGTTCCAATTACTACCGTGACCACAACGCAAGAGCCGCGCATACAAACGAATATTTCTGAATTT
AACCGCGTATTAGGTGGGGGAATTGTGAAAGGTTCGCTCGTTTTAATCGGTGGGGATCCAGGCATTGGAAAATCAACGCT
TCTTTTGCAAGTTTCTGCGCAACTTGCTGCTATGCAACATAAAGTATTATATATATCCGGCGAAGAATCCGTAAAACAAA
CGAAATTGCGCGCTGACCGCCTTCACATTGCTTCCGACCAATTGTATGTATTAGCGGAGACAGATTTGGAATATATTGCA
GAAGCAATCGAAAATGTTCGCCCCGCTTGTGTTGTGATTGATTCGATTCAAACGATTTACCGTGCAGATATTACGTCCGC
ACCAGGAAGTGTATCGCAAGTCCGTGAATGTACAGCGGAACTGATGAAAATTGCCAAAACAAAAGGAATTGCCATTTTTA
TTGTCGGCCATGTAACGAAAGAGGGAGCGATTGCCGGTCCAAGAATTTTAGAGCATATGGTGGATACGGTTCTTTATTTC
GAAGGAGAACGTCACCATACGTATCGTATTTTACGGGCGGTGAAAAACCGTTTCGGCTCCACAAATGAAATTGGTATTTT
TGAAATGAGAGATTCAGGACTTATCGAGGTCGAAAACCCTTCAGAAGTGTTTTTAGAAGAACGTTCCCGAGGGGCGGCAG
GTTCAACCGTTGTCGCAGCAATGGAAGGAACTCGTCCTGTATTAGTCGAAATTCAAGCATTAGTATCTCCAACGAGTTTT
GGCAACCCGCGGCGGATGGCAACAGGAATCGACCATAACCGTGTTTCTTTATTAATGGCCGTATTGGAAAAAAGGGTCGG
CCTGCTTTTACAAAATCAGGACGCTTACTTGAAAGTGGCAGGGGGAGTAAAATTAGACGAGCCAGCGATTGATTTGGCGA
TTGTCGTAAGCATTGCCTCAAGTTTCCGCGATCAGCCAACCAACCCGTCCGATGTGATTATCGGCGAGGTCGGTTTAACT
GGGGAAGTACGCCGTGTTTCCCGTATTGAACAACGGGTGCAAGAAGCAGTAAAATTAGGGTTTTCTCGCATCATTATTCC
TAAAAACAATTTAGCAGGATGGAATCCGCCAAAACATATAACCGTGATCGGTGTGTCCCACGTTGCCGAGGCACTTGAAC
ATACGTTGCAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-222)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

76.805

100

0.768
  radA Streptococcus mitis NCTC 12261

63.596

99.781

0.635
  radA Streptococcus mitis SK321

63.377

99.781

0.632
  radA Streptococcus pneumoniae Rx1

63.377

99.781

0.632
  radA Streptococcus pneumoniae D39

63.377

99.781

0.632
  radA Streptococcus pneumoniae R6

63.377

99.781

0.632
  radA Streptococcus pneumoniae TIGR4

63.377

99.781

0.632