Detailed information NTG0540388

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: LGV82_RS16225
• Genome accession: NZ_CP086104
• Coordinates: 3430382..3431521 (+)
• Length: 379 a.a.
• NCBI ID: WP_020831131.1
• Uniprot ID: -
• Organism: Ralstonia pseudosolanacearum strain RS650
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3425382..3436521

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LGV82_RS16210 (LGV82_16200)	-	3426006..3427334 (-)	1329	WP_104073007.1	IS4 family transposase	-
LGV82_RS16215 (LGV82_16205)	-	3427473..3428816 (-)	1344	WP_011000351.1	pitrilysin family protein	-
LGV82_RS16220 (LGV82_16210)	-	3428816..3430321 (-)	1506	WP_247394302.1	pitrilysin family protein	-
LGV82_RS16225 (LGV82_16215)	pilA	3430382..3431521 (+)	1140	WP_020831131.1	signal recognition particle-docking protein FtsY	Machinery gene
LGV82_RS16230 (LGV82_16220)	-	3431518..3432156 (-)	639	WP_011000348.1	LysE/ArgO family amino acid transporter	-
LGV82_RS16235 (LGV82_16225)	maiA	3432153..3432803 (-)	651	WP_016724252.1	maleylacetoacetate isomerase	-
LGV82_RS16240 (LGV82_16230)	-	3432807..3433508 (-)	702	WP_011000346.1	fumarylacetoacetate hydrolase family protein	-
LGV82_RS16245 (LGV82_16235)	-	3433656..3434282 (+)	627	WP_038938076.1	ANTAR domain-containing response regulator	-
LGV82_RS16250 (LGV82_16240)	-	3434559..3435821 (+)	1263	WP_011000344.1	CmpA/NrtA family ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 379 a.a.
• Molecular weight: 40157.41 Da
• Isoelectric Point: 5.8101

>NTDB_id=540388 LGV82_RS16225 WP_020831131.1 3430382..3431521(+) (pilA) [Ralstonia pseudosolanacearum strain RS650]
MFSFWKKRKAEPQPAAELAPPAAAPEAAQAPAPAPAPVAAPVPTPAPAPVAVPDTPAAPAALDMQADDIETVPTPPVVEQ
ARKGWMSRLRSGLSKTSKSLTTLFVGVKVDEALFEELETALLMADAGVDATEYLLDELRRRVKAQRIETAEGVKTALRDL
LIELLHPLEKTMVLGRDQPTVIMIAGVNGAGKTTSIGKLCKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQ
ESGDPAAVIFDAVNAARARGIDIVMADTAGRLPTQLHLMEELKKVRRVIGKAMATAPHETLLVIDANTGQNALAQVKAFD
DALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAREFADALLG

Nucleotide

• Length: 1140 bp

>NTDB_id=540388 LGV82_RS16225 WP_020831131.1 3430382..3431521(+) (pilA) [Ralstonia pseudosolanacearum strain RS650]
ATGTTTAGTTTCTGGAAGAAGCGCAAGGCAGAGCCCCAGCCGGCTGCCGAACTGGCGCCGCCCGCCGCCGCGCCCGAAGC
CGCACAGGCTCCTGCTCCTGCCCCGGCCCCGGTTGCCGCCCCCGTCCCCACGCCGGCTCCCGCCCCGGTCGCCGTGCCGG
ATACGCCGGCCGCGCCGGCTGCGCTGGACATGCAGGCCGATGACATCGAGACCGTGCCGACGCCGCCCGTGGTGGAGCAG
GCGCGCAAAGGCTGGATGTCGCGCCTGCGCTCGGGCCTGTCGAAGACCAGCAAGAGCCTGACCACGCTGTTCGTCGGCGT
GAAGGTGGACGAGGCGCTGTTCGAGGAGCTGGAGACCGCGCTGCTGATGGCCGATGCCGGCGTCGATGCCACCGAGTACC
TGCTGGACGAACTGCGCCGCCGCGTGAAGGCCCAGCGCATCGAGACCGCCGAGGGCGTGAAGACCGCGCTGCGCGACCTG
CTCATCGAGCTGCTGCATCCGCTCGAAAAGACCATGGTGCTCGGCCGCGACCAGCCGACGGTGATCATGATCGCGGGCGT
CAACGGCGCCGGCAAGACCACCAGCATCGGCAAGCTGTGCAAGCACTTCCAGACCTATGGACAGTCCGTGCTGCTGGCCG
CCGGCGACACCTTCCGCGCCGCCGCGCGCGAGCAGCTGGTGATCTGGGGCCAGCGCAACAACGTGACCGTGGTGGCACAG
GAATCGGGCGACCCGGCCGCCGTGATCTTCGACGCGGTGAACGCGGCGCGCGCCCGCGGCATCGACATCGTCATGGCCGA
CACCGCCGGCCGCCTGCCGACCCAGCTGCACCTGATGGAAGAGCTGAAGAAGGTGCGCCGCGTGATCGGCAAAGCGATGG
CGACCGCGCCGCACGAGACCCTGCTGGTGATCGACGCCAACACCGGCCAGAACGCGCTGGCGCAGGTGAAAGCCTTCGAC
GATGCGCTCGGCCTGACCGGCCTGATCGTCACCAAGCTGGACGGCACCGCCAAGGGCGGCATCCTGGCCGCCATCGCGCG
GCAGCGGCCGGTGCCGGTATATTTCATCGGCGTGGGCGAGCAGGTGGAAGACCTGCAGCCGTTCTCCGCGCGCGAATTCG
CCGACGCGCTGCTGGGCTAA

Domains

Predicted by InterProScan.

• SRP54-type protein, GTPase domain (SRP54) (179-379)

• SRP54-type protein, helical bundle domain (SRP54_N) (98-159)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	52.163	100	0.573