Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BN115_RS15195 Genome accession   NC_018829
Coordinates   3246742..3248244 (-) Length   500 a.a.
NCBI ID   WP_015041682.1    Uniprot ID   -
Organism   Bordetella bronchiseptica MO149     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3241742..3253244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN115_RS15170 (BBMO149_2994) - 3241960..3242301 (-) 342 WP_003812826.1 integration host factor subunit alpha -
  BN115_RS15175 (BBMO149_2995) pheT 3242307..3244724 (-) 2418 WP_015041680.1 phenylalanine--tRNA ligase subunit beta -
  BN115_RS15180 (BBMO149_2996) pheS 3244737..3245759 (-) 1023 WP_041166072.1 phenylalanine--tRNA ligase subunit alpha -
  BN115_RS15185 (BBMO149_2997) rplT 3245834..3246193 (-) 360 WP_003812832.1 50S ribosomal protein L20 -
  BN115_RS15190 (BBMO149_2998) rpmI 3246209..3246406 (-) 198 WP_003812834.1 50S ribosomal protein L35 -
  BN115_RS15195 (BBMO149_2999) comM 3246742..3248244 (-) 1503 WP_015041682.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BN115_RS15200 (BBMO149_3000) - 3248351..3248617 (-) 267 WP_010931105.1 accessory factor UbiK family protein -
  BN115_RS15205 (BBMO149_3001) - 3249325..3249663 (+) 339 WP_003812839.1 P-II family nitrogen regulator -
  BN115_RS15210 (BBMO149_3002) amt 3249689..3250927 (+) 1239 WP_003820413.1 ammonium transporter -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 52219.31 Da        Isoelectric Point: 8.8352

>NTDB_id=54037 BN115_RS15195 WP_015041682.1 3246742..3248244(-) (comM) [Bordetella bronchiseptica MO149]
MTLAVLASRAIAGWQAPAVRVETHLGSGLPAFAIVGLPDVEVRESRERVRAAIQNSGFDFPPGRITVNLSPADLPKASAR
FDLPIALGILLASGQVAASAAQTAALPDCVWAAELSLSGALVPLAAPLALALAVAREQPGATLVLPAGSAAVAAWVPGIR
VLAAHTLGEAAAYLAGHAELAPAERRSWPEAEPGPCLSDVRGQPAARRALEVAAAGGHSLLMCGPPGAGKSMLAQRLPGL
LPPLEQRQALEVAAIAGAVGAPEVLRGQPPFRAPHHSASAAALVGGGARPRPGEISLAHHGVLFLDELPEFERRALESLR
EPLETGKVVISRALHSVEYPAVFQLVAAMNPCPCGWRGHASKACRCTPDQVRRYAARVSGPLVDRIDLWIELPATEPQWL
AEPPGEPSLPVRERVARCRQRQLARQGCLNAKLSGPALDAHCALGAAARTLLQQAMRRLGGSARAAHRALRVARTLADLA
HEPEIGAAHIAEAVQYRRPA

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=54037 BN115_RS15195 WP_015041682.1 3246742..3248244(-) (comM) [Bordetella bronchiseptica MO149]
ATGACCCTGGCCGTATTGGCCAGCCGGGCAATCGCCGGCTGGCAGGCGCCCGCCGTGCGCGTCGAGACCCATCTGGGCAG
CGGCCTGCCCGCTTTTGCCATCGTCGGGCTGCCCGACGTCGAGGTCCGCGAAAGCCGCGAACGGGTGAGGGCGGCCATCC
AGAACAGCGGCTTCGATTTCCCGCCCGGCCGCATCACCGTCAACCTGTCGCCCGCCGACCTGCCCAAGGCCTCGGCGCGC
TTCGATTTGCCCATTGCGCTGGGTATCCTGCTGGCCAGCGGCCAGGTGGCCGCCAGCGCCGCGCAAACGGCGGCGCTGCC
CGACTGCGTGTGGGCGGCCGAGCTGTCGCTGTCGGGCGCCCTGGTGCCGCTGGCCGCGCCCTTGGCCCTGGCGCTGGCCG
TGGCACGCGAGCAGCCGGGCGCGACGCTGGTGCTGCCGGCTGGCAGCGCCGCCGTGGCCGCATGGGTGCCGGGCATCCGG
GTGCTGGCTGCCCATACGCTGGGCGAGGCGGCGGCGTACCTGGCCGGGCACGCCGAGCTGGCGCCAGCCGAGCGCCGCAG
CTGGCCCGAGGCCGAACCCGGTCCGTGCCTGTCCGACGTGCGGGGCCAGCCGGCTGCCCGGCGCGCCTTGGAAGTGGCGG
CCGCCGGCGGCCACAGCCTCTTGATGTGCGGGCCGCCCGGGGCGGGCAAAAGCATGCTGGCGCAACGCCTGCCGGGCCTG
CTGCCGCCGCTGGAGCAGCGCCAGGCGCTGGAGGTGGCGGCCATCGCGGGCGCCGTCGGGGCGCCCGAGGTCCTGCGCGG
CCAGCCGCCGTTCCGGGCCCCCCATCACTCCGCCTCGGCCGCCGCCCTGGTGGGCGGCGGCGCCAGGCCTCGCCCGGGCG
AGATCAGCCTGGCGCACCATGGCGTGCTGTTCCTGGACGAACTGCCCGAGTTCGAGCGTCGCGCCCTGGAGTCCCTGCGC
GAGCCGCTGGAGACCGGCAAGGTCGTCATCTCCCGGGCGCTGCACAGCGTCGAGTACCCCGCCGTATTCCAGCTGGTGGC
GGCCATGAACCCGTGCCCCTGCGGCTGGCGCGGGCATGCGTCGAAGGCCTGCCGCTGCACGCCGGACCAGGTGCGCCGCT
ATGCGGCGCGCGTGTCCGGGCCGCTGGTCGATCGCATAGACCTGTGGATCGAGCTGCCCGCCACCGAGCCGCAGTGGCTG
GCCGAACCGCCGGGCGAGCCCTCCCTCCCGGTGCGCGAGCGCGTGGCGCGCTGCCGCCAGCGGCAATTGGCCCGCCAGGG
CTGCCTGAACGCCAAGCTGTCCGGCCCGGCGCTCGATGCGCATTGCGCCCTGGGCGCCGCGGCCCGCACGCTGCTGCAGC
AGGCCATGCGGCGCCTGGGCGGCTCGGCGCGCGCCGCCCATCGCGCGCTCAGGGTGGCGCGCACCCTGGCCGACCTTGCG
CACGAGCCGGAGATCGGCGCCGCCCATATCGCCGAAGCGGTACAGTACCGCCGTCCCGCCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-147)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(197-397)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.907

100

0.492
  comM Vibrio campbellii strain DS40M4

48.111

100

0.484
  comM Haemophilus influenzae Rd KW20

45.759

100

0.464
  comM Legionella pneumophila str. Paris

45.312

100

0.464
  comM Legionella pneumophila strain ERS1305867

45.312

100

0.464
  comM Glaesserella parasuis strain SC1401

45.276

100

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.157

100

0.43

Multiple sequence alignment