Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JTY93_RS22865 Genome accession   NZ_CP070506
Coordinates   5108507..5109874 (-) Length   455 a.a.
NCBI ID   WP_029292126.1    Uniprot ID   A0AAP6YGH3
Organism   Pseudomonas hygromyciniae strain SDM007     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5103507..5114874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTY93_RS22845 (JTY93_22845) yjiA 5104450..5105409 (-) 960 WP_169999406.1 GTPase -
  JTY93_RS22850 (JTY93_22850) - 5105566..5105763 (-) 198 WP_029292120.1 YbdD/YjiX family protein -
  JTY93_RS22855 (JTY93_22855) - 5105779..5107845 (-) 2067 WP_115129043.1 carbon starvation CstA family protein -
  JTY93_RS22860 (JTY93_22860) - 5108019..5108387 (+) 369 WP_205478810.1 PilZ domain-containing protein -
  JTY93_RS22865 (JTY93_22865) radA 5108507..5109874 (-) 1368 WP_029292126.1 DNA repair protein RadA Machinery gene
  JTY93_RS22870 (JTY93_22870) - 5109910..5110440 (-) 531 WP_205478809.1 ankyrin repeat domain-containing protein -
  JTY93_RS22875 (JTY93_22875) - 5110579..5112120 (-) 1542 WP_205478808.1 catalase -
  JTY93_RS22880 (JTY93_22880) mscL 5112406..5112822 (+) 417 WP_076963559.1 large-conductance mechanosensitive channel protein MscL -
  JTY93_RS22885 (JTY93_22885) - 5112882..5113658 (-) 777 WP_205478806.1 ferredoxin--NADP reductase -
  JTY93_RS22890 (JTY93_22890) - 5114086..5114796 (+) 711 WP_205478805.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48699.18 Da        Isoelectric Point: 6.8987

>NTDB_id=540359 JTY93_RS22865 WP_029292126.1 5108507..5109874(-) (radA) [Pseudomonas hygromyciniae strain SDM007]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=540359 JTY93_RS22865 WP_029292126.1 5108507..5109874(-) (radA) [Pseudomonas hygromyciniae strain SDM007]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAATGGGCGGGCCAGTGTGGCGAATG
TGGGGCGTGGAACACCCTCACTGAAACCATGATTGAAAGTGGCGGCGCCGCAGCACCCACCGGTCGCGCAGGCTGGACCG
GCCAGCAAGCCCAGATCAAGACCCTGGCTGAAGTCAGCGTCGAAGAAATTCCGCGCTTCTCCACCGCTTCCGGCGAGCTT
GACCGGGTGCTCGGTGGCGGCCTGGTGGACGGCTCTGTAGTGCTGATCGGCGGTGATCCGGGCATCGGCAAGTCGACCAT
CCTCCTGCAGACCCTGTGCAGCATCGCCAGCCGTATGCCGGCCTTGTATGTCACCGGCGAAGAATCCCAGCAGCAAGTGG
CCATGCGCGCCCGTCGCCTGGGCTTGCCCCAGGACCAGCTACGGGTCATGACCGAGACCTGTATCGAAAGCATCATCGCC
ACCGCCCGTGTGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAGCAACTGCAATCGGCACC
GGGTGGGGTGTCCCAGGTGCGGGAGAGCGCGGCACTGCTGGTGCGCTATGCCAAGCAAAGCGGTACGGCGATTTTCCTGG
TCGGCCATGTCACCAAGGAAGGCGCGTTGGCCGGCCCGCGGGTGCTGGAGCATATGGTCGATACGGTGCTGTATTTCGAG
GGCGAGTCCGACGGGCGCCTGCGTCTGTTGCGGGCGGTAAAAAACCGTTTCGGAGCGGTCAACGAACTGGGGGTGTTCGC
CATGACGGACCGGGGGCTCAAAGAAGTCTCCAACCCCTCGGCGATTTTTCTGACCCGCGCCCAGGAAGAGGTCCCGGGCA
GTGTGGTGATGGCGACGTGGGAGGGCACCCGGCCAATGCTGGTGGAAGTCCAGGCCCTGGTGGACGACAGCCATCTGGCC
AACCCGCGCCGTGTGACCCTGGGCCTGGATCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCATCGCCACGGTGGGAT
TCCAACCCATGACCAGGACGTGTTCCTCAACGTGGTCGGCGGCGTCAAGGTGCTGGAAACCGCGTCGGACCTGGCATTGA
TGGCGGCCGTGATGTCGAGCCTGCGCAATCGGCCATTGCCCCATGACCTGTTGGTGTTTGGTGAAGTGGGCCTGTCGGGC
GAGGTACGCCCGGTGCCCAGCGGCCAGGAGCGTCTGAAGGAGGCGGCCAAGCATGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAATGCACCGAAGGAGGCGCCACCAGGCTTGCAGGTGATTGCGGTGACGCGTCTGGAACAGGCTCTGGATGCCTTGT
TCGAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus pneumoniae Rx1

46.739

100

0.473
  radA Streptococcus pneumoniae R6

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.739

100

0.473
  radA Streptococcus pneumoniae D39

46.739

100

0.473
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468