NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	JWU58_RS04590	Genome accession	NZ_CP070503
Coordinates	986558..987925 (+)	Length	455 a.a.
NCBI ID	WP_024014403.1	Uniprot ID	V8R222
Organism	Pseudomonas atacamensis strain SM1
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 981558..992925

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JWU58_RS04565 (JWU58_04565)	-	981823..982533 (-)	711	WP_206421532.1	autoinducer binding domain-containing protein	-
JWU58_RS04570 (JWU58_04570)	-	982845..983621 (+)	777	WP_206421533.1	ferredoxin--NADP reductase	-
JWU58_RS04575 (JWU58_04575)	mscL	983667..984080 (-)	414	WP_024014404.1	large-conductance mechanosensitive channel protein MscL	-
JWU58_RS04580 (JWU58_04580)	-	984366..985907 (+)	1542	WP_206421534.1	catalase	-
JWU58_RS04585 (JWU58_04585)	-	985965..986510 (+)	546	WP_123443303.1	ankyrin repeat domain-containing protein	-
JWU58_RS04590 (JWU58_04590)	radA	986558..987925 (+)	1368	WP_024014403.1	DNA repair protein RadA	Machinery gene
JWU58_RS04595 (JWU58_04595)	-	988110..988478 (-)	369	WP_071173654.1	PilZ domain-containing protein	-
JWU58_RS04600 (JWU58_04600)	-	988638..990704 (+)	2067	WP_016773099.1	carbon starvation CstA family protein	-
JWU58_RS04605 (JWU58_04605)	-	990720..990917 (+)	198	WP_003228401.1	YbdD/YjiX family protein	-
JWU58_RS04610 (JWU58_04610)	yjiA	991079..992050 (+)	972	WP_206421535.1	GTPase	-
JWU58_RS04615 (JWU58_04615)	-	992167..992871 (-)	705	WP_206421536.1	GntR family transcriptional regulator	-

Sequence

Protein

Download Length: 455 a.a. Molecular weight: 48759.22 Da Isoelectric Point: 6.8987

                                >NTDB_id=540293 JWU58_RS04590 WP_024014403.1 986558..987925(+) (radA) [Pseudomonas atacamensis strain SM1]

MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGATAPTGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL

DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA

TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE

GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA

NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG

EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLQIIAVSRLEQALDALFE

Nucleotide

Download Length: 1368 bp

                                >NTDB_id=540293 JWU58_RS04590 WP_024014403.1 986558..987925(+) (radA) [Pseudomonas atacamensis strain SM1]

ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGGCAGTGCGGCGAGTG

CGGTGCCTGGAACACCCTGACCGAAACCATGATCGAAAGCGGCGGCGCCACGGCTCCCACCGGGCGCACCGGTTGGGCTG

GCCAGCAGGCGCAGATCAAGACGCTCGCGGAAGTCAGCATCGAAGAGATTCCACGTTTTTCCACCGCGTCCGGTGAGCTC

GACCGCGTGCTCGGCGGTGGTCTGGTCGATGGCTCGGTGGTGCTGATCGGCGGTGATCCGGGGATCGGTAAATCGACAAT

CCTGCTCCAGACCCTGTGCAATCTGGCCAAGAGCATGCCAGCGCTGTACGTCACCGGTGAGGAATCCCAGCAGCAGGTAG

CGATGCGCGCTCGCCGTCTCGGCCTGCCGCAGGATCAACTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATCGCC

ACCGCCCGCCAGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAACAACTGCAATCGGCGCC

GGGCGGCGTATCCCAGGTGCGCGAGAGCGCGGCGTTGCTGGTGCGTTACGCCAAACAGAGCGGCACGGCGATCTTCCTCG

TCGGCCACGTCACTAAAGAAGGTGCGCTGGCCGGGCCGCGTGTTCTGGAACACATGGTCGACACGGTGCTGTATTTCGAA

GGTGAATCCGATGGTCGACTGCGTCTGCTGCGGGCGGTGAAAAACCGTTTCGGCGCGGTCAACGAGTTGGGCGTGTTCGG

CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCATCGGCGATTTTTCTTACCCGTGCTCAGGAAGAAGTCCCGGGCA

GTGTGGTCATGGCGACGTGGGAAGGCACCCGGCCGATGCTGGTCGAAGTGCAGGCGCTGGTCGATGACAGCCATCTGGCC

AACCCGCGTCGGGTGACGCTGGGGCTGGATCAGAACCGATTGGCGATGTTGCTCGCGGTGCTGCACCGCCACGGCGGGAT

TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTGGGTGGCGTGAAGGTGCTGGAGACGGCGTCGGATCTGGCGTTGA

TGGCGGCGGTGATGTCGAGTTTGCGCAACCGGCCGCTGCCCCATGACCTGCTGGTGTTCGGCGAAGTCGGCCTGTCTGGC

GAGGTGCGCCCGGTGCCGAGCGGGCAGGAGCGGCTTAAGGAAGCGGCCAAGCACGGCTTCAAACGCGCGATCGTGCCCAA

GGGTAACGCACCGAAGGAATCGCCTCCCGGCTTGCAGATCATCGCCGTGAGCCGCCTTGAACAGGCCCTTGACGCACTGT

TTGAGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	V8R222

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.453	100	0.497
radA	Streptococcus mitis SK321	46.272	100	0.464
radA	Streptococcus mitis NCTC 12261	46.053	100	0.462
radA	Streptococcus pneumoniae Rx1	46.053	100	0.462
radA	Streptococcus pneumoniae D39	46.053	100	0.462
radA	Streptococcus pneumoniae R6	46.053	100	0.462
radA	Streptococcus pneumoniae TIGR4	46.053	100	0.462

Detailed information NTG0540293