Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LL046_RS04415 Genome accession   NZ_CP086088
Coordinates   855457..857124 (+) Length   555 a.a.
NCBI ID   WP_017864362.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP13A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 850457..862124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL046_RS04390 (LL046_04370) - 851497..851736 (+) 240 WP_003131346.1 exodeoxyribonuclease VII small subunit -
  LL046_RS04395 (LL046_04375) - 851885..853042 (+) 1158 WP_017864361.1 glycerate kinase -
  LL046_RS04400 (LL046_04380) - 853123..853980 (+) 858 WP_003131348.1 polyprenyl synthetase family protein -
  LL046_RS04405 (LL046_04385) - 854060..854866 (+) 807 WP_003131349.1 TlyA family RNA methyltransferase -
  LL046_RS04410 (LL046_04390) - 854863..855309 (+) 447 WP_003131351.1 arginine repressor -
  LL046_RS04415 (LL046_04395) recN 855457..857124 (+) 1668 WP_017864362.1 DNA repair protein RecN Machinery gene
  LL046_RS04420 (LL046_04400) - 857850..858416 (+) 567 WP_003131353.1 TMEM175 family protein -
  LL046_RS04425 (LL046_04405) - 858514..859035 (+) 522 WP_003131354.1 DUF805 domain-containing protein -
  LL046_RS04430 (LL046_04410) - 859058..859990 (+) 933 WP_211752418.1 DUF805 domain-containing protein -
  LL046_RS04435 (LL046_04415) rsmH 860215..861168 (+) 954 WP_017864364.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  LL046_RS04440 (LL046_04420) - 861326..861706 (+) 381 WP_003131357.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62810.02 Da        Isoelectric Point: 4.6475

>NTDB_id=540268 LL046_RS04415 WP_017864362.1 855457..857124(+) (recN) [Lactococcus lactis subsp. lactis strain EIP13A]
MLQEISIKNFAIIEEIHLSFESGMTILTGETGAGKSIIIDAMSLLLGGRASSDFVRHGANKAEIEGLFFFDKTPELKAVL
LELGFEEVDSEIILRREIFANGRSVCRINGQMVNLATLRQVGELLVDIHGQHDSQELMNPKSHLRLLDEFGDEAFDQIKN
NYKLKFENFKNLRQQLNLRQKNEQEFAQRIEILQFQAEEIEAAEINLEEDEQLINRREKLNNIKNIADSLSSAYLALDDE
DNDYSSLNNIRTTMTELDKISNFDNDYQELADKTAESYYVLEEVANQIQRIMSDLEFNPAELLQIEDRIMTLTTLKKKYG
PELSDVMNYLEKVQLELSELTGSENDSENLENSVKVAQVQLIEASKKLNEARHKIAKEVEKDIKHELSELYMEKADFKVS
FEGAKFSANGNEHVEFFIQTNPGEGFKPLAKTASGGELSRLMLAIKSSFSRRENKTAIVFDEVDTGVSGRVAQAIANKIY
KIARHGQVLAISHLPQVVAIADRQFYIEKASTDDITTSTVRKLNAEERVNEIAKMLAGEDLTKEALAQAKRLLSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=540268 LL046_RS04415 WP_017864362.1 855457..857124(+) (recN) [Lactococcus lactis subsp. lactis strain EIP13A]
ATGTTACAAGAGATTTCAATCAAAAATTTTGCAATTATTGAAGAAATTCATCTATCCTTTGAGAGTGGAATGACGATTTT
AACTGGGGAAACTGGTGCGGGAAAATCAATAATTATTGATGCAATGTCTTTATTATTAGGTGGGCGTGCTTCGAGTGATT
TTGTGCGGCATGGGGCAAACAAAGCCGAAATAGAAGGTCTCTTTTTCTTTGATAAAACTCCAGAATTGAAGGCGGTATTA
TTAGAACTTGGCTTTGAAGAAGTAGATTCTGAAATTATTTTAAGACGTGAGATTTTTGCTAATGGTCGTTCCGTTTGTCG
AATCAATGGTCAAATGGTTAATTTAGCTACGCTAAGACAAGTGGGTGAATTATTAGTTGATATTCATGGTCAACACGATA
GCCAAGAATTGATGAATCCGAAAAGCCATCTTCGTTTACTTGATGAATTTGGTGACGAAGCCTTTGATCAGATAAAAAAT
AATTACAAACTCAAATTTGAAAACTTCAAAAATTTGCGTCAACAGCTCAATTTACGACAAAAAAATGAGCAAGAATTTGC
TCAAAGAATTGAAATTCTTCAATTTCAGGCTGAAGAAATTGAAGCGGCGGAAATTAATCTTGAAGAAGATGAACAATTAA
TTAATCGCCGAGAAAAGTTAAATAATATTAAAAATATTGCTGATTCGCTTAGTAGTGCTTATCTAGCGCTTGATGATGAA
GATAATGATTATTCAAGTCTTAATAATATCCGAACAACAATGACAGAATTGGATAAAATTAGTAACTTTGATAATGACTA
TCAAGAACTTGCTGACAAGACAGCTGAAAGTTATTATGTATTAGAAGAAGTTGCTAATCAAATTCAAAGAATCATGAGTG
ATTTAGAATTTAATCCAGCTGAACTTTTACAAATTGAAGACCGGATTATGACCTTGACCACTTTGAAGAAAAAATATGGC
CCAGAACTGTCCGATGTGATGAACTATTTAGAGAAAGTCCAACTTGAACTCTCAGAACTGACGGGTTCAGAAAATGACTC
AGAAAATCTAGAAAATTCAGTTAAAGTTGCACAAGTTCAGCTCATTGAAGCAAGTAAAAAACTTAATGAAGCGCGCCATA
AAATTGCCAAAGAAGTTGAAAAAGATATTAAACACGAACTTTCTGAGCTTTATATGGAAAAAGCTGATTTCAAAGTTAGT
TTTGAAGGGGCAAAATTTTCAGCAAACGGGAATGAGCATGTTGAATTCTTTATTCAAACCAATCCGGGAGAAGGATTTAA
ACCGCTGGCAAAAACAGCTTCGGGTGGTGAACTTTCACGTTTAATGCTCGCCATAAAATCAAGCTTTTCAAGACGCGAAA
ATAAAACAGCCATTGTTTTTGATGAGGTTGATACTGGTGTTTCTGGCCGTGTTGCTCAAGCGATTGCTAATAAAATATAT
AAAATTGCTAGACATGGGCAAGTTCTTGCAATTTCTCACCTTCCGCAAGTTGTGGCCATTGCCGACAGACAATTTTATAT
TGAAAAAGCTTCAACCGATGACATTACTACTTCCACAGTTAGAAAATTAAACGCTGAAGAAAGAGTAAATGAAATTGCGA
AAATGCTTGCTGGTGAAGATTTAACTAAAGAAGCCTTAGCTCAGGCTAAACGTTTATTGAGCAAATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_23)

(4-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.182

100

0.445