Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JSQ81_RS11060 Genome accession   NZ_CP070502
Coordinates   2128363..2129736 (-) Length   457 a.a.
NCBI ID   WP_212604127.1    Uniprot ID   A0A975KJL2
Organism   Sporosarcina sp. Marseille-Q4063     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2123363..2134736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSQ81_RS11040 (JSQ81_11040) gltX 2124177..2125637 (-) 1461 WP_212604123.1 glutamate--tRNA ligase -
  JSQ81_RS11045 (JSQ81_11045) ispF 2125697..2126173 (-) 477 WP_212604124.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  JSQ81_RS11050 (JSQ81_11050) ispD 2126170..2126862 (-) 693 WP_212604125.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  JSQ81_RS11055 (JSQ81_11055) - 2126888..2127991 (-) 1104 WP_212604126.1 PIN/TRAM domain-containing protein -
  JSQ81_RS11060 (JSQ81_11060) radA 2128363..2129736 (-) 1374 WP_212604127.1 DNA repair protein RadA Machinery gene
  JSQ81_RS11065 (JSQ81_11065) - 2129811..2132273 (-) 2463 WP_212604128.1 ATP-dependent Clp protease ATP-binding subunit -
  JSQ81_RS11070 (JSQ81_11070) - 2132433..2133521 (-) 1089 WP_212604129.1 protein arginine kinase -
  JSQ81_RS11075 (JSQ81_11075) - 2133511..2134068 (-) 558 WP_212604130.1 UvrB/UvrC motif-containing protein -
  JSQ81_RS11080 (JSQ81_11080) - 2134110..2134577 (-) 468 WP_212604131.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50138.72 Da        Isoelectric Point: 7.2257

>NTDB_id=540263 JSQ81_RS11060 WP_212604127.1 2128363..2129736(-) (radA) [Sporosarcina sp. Marseille-Q4063]
MSKRKSKFMCKDCGYESPKWMGRCPGCGEWNTMNEEIEVVSKGPRGAFQHSENVRQKAMPISKVEINAEPRVETDLGELN
RVLGGGIVPGSLLLTAGDPGIGKSTLLLQVSSLLANAGHRVLYISGEESIRQTKLRAERLGVLSDELYIYAETDLEQIHH
TIEEVKPKFVIVDSIQTIHHPEVKSAPGSITQVRESTAELMRIAKTQNIAIFLVGHVTKDGQIAGPRILEHMVDTVLYFE
GERHHTYRILRSVKNRFGSTNEIAIFEMLQSGLKEVLNPSELFLRERSQGGAGSTVVASMEGTRPILVEIQALVTPSSFN
YPKRMATGLDQNRVSLLMAVLEKRMGMLLQAQDAYIKVAGGVKLDEPAIDLAVLVSIVSSYRDTAAGLSDCFIGEVGLTG
EVRRVSRIEQRVSEAAKLGFERAIVPQSNLGGWDYPKGIQVIGVETVSDALKVGFAK

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=540263 JSQ81_RS11060 WP_212604127.1 2128363..2129736(-) (radA) [Sporosarcina sp. Marseille-Q4063]
ATGTCGAAACGAAAGTCAAAATTCATGTGTAAAGATTGTGGCTATGAATCTCCTAAATGGATGGGACGCTGCCCAGGTTG
CGGCGAATGGAACACAATGAACGAAGAAATAGAAGTTGTGAGTAAAGGTCCGCGAGGCGCTTTCCAGCATTCTGAAAATG
TGCGTCAAAAAGCCATGCCAATCAGTAAAGTTGAAATCAATGCAGAACCTCGTGTGGAAACCGATTTAGGTGAATTAAAC
CGAGTTCTCGGCGGTGGAATTGTACCGGGTTCTCTTCTTCTAACGGCCGGAGATCCAGGTATCGGTAAGTCAACGCTTCT
CCTCCAAGTATCCTCGCTACTTGCGAATGCAGGTCATCGCGTTTTGTATATTTCAGGTGAAGAATCGATTCGTCAAACGA
AACTGCGCGCGGAACGACTTGGCGTTTTATCGGATGAACTTTACATATATGCTGAAACCGATTTGGAGCAAATTCATCAT
ACGATCGAAGAAGTAAAACCGAAGTTTGTCATTGTCGACTCCATCCAGACGATTCATCACCCGGAAGTGAAATCTGCCCC
GGGAAGCATTACGCAAGTGCGTGAATCCACAGCTGAGCTCATGCGTATCGCGAAGACGCAAAACATCGCGATATTTCTCG
TCGGGCATGTGACGAAAGACGGTCAAATTGCGGGTCCGAGAATACTCGAACATATGGTAGACACGGTTCTTTATTTTGAA
GGAGAACGCCATCATACGTACCGGATTTTGCGAAGCGTTAAAAACAGATTCGGTTCAACAAATGAAATCGCTATTTTTGA
GATGTTGCAATCTGGATTGAAAGAAGTGCTAAATCCATCCGAGCTGTTTCTTCGAGAAAGATCACAAGGCGGTGCGGGTT
CAACGGTTGTTGCTTCAATGGAGGGAACAAGGCCGATACTCGTTGAAATCCAGGCGCTCGTGACACCTTCCAGTTTTAAT
TATCCAAAACGAATGGCGACGGGGTTGGACCAAAACAGGGTATCCCTTTTAATGGCGGTTTTGGAAAAGCGGATGGGTAT
GCTATTACAAGCGCAAGATGCCTATATTAAAGTCGCGGGCGGCGTGAAACTAGATGAACCGGCAATCGATCTTGCGGTTT
TAGTAAGCATTGTATCCAGTTACCGCGATACTGCAGCTGGTTTATCTGACTGCTTTATTGGGGAAGTTGGGTTAACGGGA
GAAGTTCGGCGTGTTTCGCGTATTGAACAACGAGTCTCAGAAGCTGCCAAACTGGGATTTGAACGCGCAATCGTTCCCCA
GTCAAATCTAGGCGGTTGGGATTACCCGAAAGGAATTCAGGTAATCGGTGTCGAAACAGTAAGTGATGCCTTGAAGGTCG
GTTTTGCAAAATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(359-429)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.996

100

0.691
  radA Streptococcus pneumoniae Rx1

61.488

100

0.615
  radA Streptococcus pneumoniae D39

61.488

100

0.615
  radA Streptococcus pneumoniae R6

61.488

100

0.615
  radA Streptococcus pneumoniae TIGR4

61.488

100

0.615
  radA Streptococcus mitis NCTC 12261

61.488

100

0.615
  radA Streptococcus mitis SK321

61.269

100

0.613