Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   LL046_RS02270 Genome accession   NZ_CP086088
Coordinates   432451..433167 (-) Length   238 a.a.
NCBI ID   WP_021721894.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP13A     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 427451..438167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL046_RS02255 (LL046_02240) cdaA 429143..430021 (+) 879 WP_003131542.1 diadenylate cyclase CdaA -
  LL046_RS02260 (LL046_02245) - 430011..430970 (+) 960 WP_240819035.1 YbbR-like domain-containing protein -
  LL046_RS02265 (LL046_02250) glmM 431016..432374 (+) 1359 WP_021721895.1 phosphoglucosamine mutase -
  LL046_RS02270 (LL046_02255) treR 432451..433167 (-) 717 WP_021721894.1 trehalose operon repressor Regulator
  LL046_RS02275 (LL046_02260) - 433278..433763 (+) 486 WP_021721893.1 PTS glucose transporter subunit IIA -
  LL046_RS02280 (LL046_02265) - 433900..435465 (+) 1566 WP_211752548.1 PTS transporter subunit EIIC -
  LL046_RS02285 (LL046_02270) - 435533..437842 (+) 2310 WP_211752547.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27922.61 Da        Isoelectric Point: 6.4168

>NTDB_id=540258 LL046_RS02270 WP_021721894.1 432451..433167(-) (treR) [Lactococcus lactis subsp. lactis strain EIP13A]
MKKYEVILQDLEKKIFNDIYKTNDILPSENELSVNYESSRSTVRQALKILEEKGLIQRRHGYGSIVLAHDRLLFPISGLT
SYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAVGEHAISILRRRKVDGKFSILDWDLFLEKYSEGLTPEHAKISTY
DYLEDNLGLDIAYAQKEVTIDFACEDDFKYLDLNLKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=540258 LL046_RS02270 WP_021721894.1 432451..433167(-) (treR) [Lactococcus lactis subsp. lactis strain EIP13A]
ATGAAGAAATATGAAGTGATTTTGCAAGATTTAGAAAAAAAGATTTTTAACGATATCTATAAAACGAACGATATTCTTCC
GAGTGAAAATGAGCTCTCTGTTAATTACGAGAGCAGTCGTTCAACAGTCAGACAGGCTTTAAAAATTTTAGAAGAGAAAG
GGCTTATTCAAAGACGACATGGCTATGGTAGCATTGTCCTCGCTCACGATAGGCTCCTTTTCCCTATCTCTGGCTTAACT
TCATACAAAGAACTACAAACCTCTATGGGTTTCCATAGTGAAACTGAGGTCATTCGCTTTGAAAGACTTGAAATTAACCC
TAAACTTTCAGAAACAACTGGTTTTGCCGTTGGGGAACACGCCATAAGTATTCTCAGAAGGCGCAAAGTAGATGGCAAGT
TTTCAATTTTAGATTGGGATTTATTTTTAGAAAAATATTCCGAAGGTTTAACTCCAGAACATGCTAAAATTTCAACCTAT
GACTACTTAGAAGATAATTTAGGGCTTGACATTGCCTATGCTCAAAAGGAAGTCACGATTGATTTTGCTTGCGAAGATGA
CTTTAAATACCTTGACTTAAATCTCAAAGACCATCATGTCGTTTCTGTCAAATCCCATGTTTATCTTGCTGATAATACTC
TTTTTCAGTATACTGAATCTCGACATCAAGTCGACCGCTTTCGTTTCACAGAATTCGCTAGACGACAAAAAAGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(89-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

46.414

99.58

0.462