Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JSQ81_RS01460 Genome accession   NZ_CP070502
Coordinates   277718..279409 (+) Length   563 a.a.
NCBI ID   WP_212605980.1    Uniprot ID   A0A975QAT4
Organism   Sporosarcina sp. Marseille-Q4063     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 272718..284409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSQ81_RS01435 (JSQ81_01435) - 273252..273497 (+) 246 WP_212605975.1 exodeoxyribonuclease VII small subunit -
  JSQ81_RS01440 (JSQ81_01440) - 273487..274371 (+) 885 WP_212605976.1 polyprenyl synthetase family protein -
  JSQ81_RS01445 (JSQ81_01445) dxs 274468..276369 (+) 1902 WP_212605977.1 1-deoxy-D-xylulose-5-phosphate synthase -
  JSQ81_RS01450 (JSQ81_01450) - 276369..277187 (+) 819 WP_212605978.1 TlyA family RNA methyltransferase -
  JSQ81_RS01455 (JSQ81_01455) ahrC 277253..277702 (+) 450 WP_212605979.1 transcriptional regulator AhrC/ArgR -
  JSQ81_RS01460 (JSQ81_01460) recN 277718..279409 (+) 1692 WP_212605980.1 DNA repair protein RecN Machinery gene
  JSQ81_RS01465 (JSQ81_01465) - 279522..280490 (+) 969 WP_212605981.1 SpoIVB peptidase S55 domain-containing protein -
  JSQ81_RS01470 (JSQ81_01470) spo0A 280695..281486 (+) 792 WP_212605982.1 sporulation transcription factor Spo0A -
  JSQ81_RS01475 (JSQ81_01475) - 281703..281954 (-) 252 WP_212605983.1 DUF2627 domain-containing protein -
  JSQ81_RS01480 (JSQ81_01480) - 282082..284115 (+) 2034 WP_212605984.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 64008.75 Da        Isoelectric Point: 5.3619

>NTDB_id=540248 JSQ81_RS01460 WP_212605980.1 277718..279409(+) (recN) [Sporosarcina sp. Marseille-Q4063]
MLNEISIKNFAIIEQLDVRFENGLTVLTGETGAGKSIIIDAVQLIAGGRGSQRFIRHGANRAELEGHFSIEDSKHPVINT
LQQFGIEVEDGVIILRRDLNSNGKNVCRINGNLVTIAVLREVGNQIIDIHGQHENQELMHERRHIHLLDQYAGNKMEEAY
ASYLELYNKYLKLKRKLEAADENEQQVAQRIDLYSFQLKEINEAQLEIGEDEKLEDEQRKLQNFNRLYERLNTAYESISG
DSRALDWVGSAMSDMEDAAEVDRDLANQLESISTSFYTLQETAHELRNRIDDLEFDPARLDIVEERLALHIALKRKYGNT
TEDILIYRDKIADELESLINRDERLLVEQEKLIQLKKDLEIEAEELSIIRRNSAKQLEIAILEQLQQLHMEKASFKVMID
RKKGFDITGYDDIAFHISTNVGEPLKPLVKVASGGELSRLMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKIAM
VASHSQVLCISHLPQVAAMADQHYLIKKEVKNKRTTTAIENVHNKERTNELSRMLSGAETTPLTLKHAEELLTLAAVRKK
SFR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=540248 JSQ81_RS01460 WP_212605980.1 277718..279409(+) (recN) [Sporosarcina sp. Marseille-Q4063]
ATGTTAAATGAAATTTCAATTAAAAATTTCGCGATCATTGAACAACTTGATGTTCGATTTGAAAATGGACTTACTGTGTT
AACTGGCGAGACGGGAGCAGGAAAATCGATAATTATCGATGCTGTTCAATTGATAGCGGGTGGACGCGGATCGCAACGCT
TTATTCGCCATGGGGCAAATCGAGCTGAGCTTGAAGGGCATTTCAGCATCGAAGATTCAAAGCATCCGGTCATTAATACA
TTGCAACAATTCGGTATCGAAGTAGAAGATGGAGTTATAATTTTACGTCGAGATCTTAATAGTAACGGGAAAAATGTTTG
CCGGATAAACGGTAATCTCGTTACAATTGCGGTATTAAGAGAAGTAGGCAATCAAATCATTGACATTCACGGTCAACACG
AAAACCAAGAATTAATGCATGAACGCAGGCATATTCACCTATTAGATCAATATGCAGGGAACAAAATGGAAGAAGCGTAT
GCTAGTTATCTAGAATTATATAATAAGTATTTGAAATTGAAGAGAAAATTAGAAGCAGCCGATGAAAATGAACAGCAAGT
TGCTCAACGAATCGATCTTTATTCTTTTCAATTAAAAGAAATAAATGAGGCACAACTTGAAATCGGGGAAGATGAAAAAC
TTGAAGATGAACAGCGAAAACTTCAAAACTTCAATCGTCTTTATGAACGTTTAAATACCGCGTACGAGTCCATAAGTGGC
GATTCGCGCGCACTCGATTGGGTGGGCTCTGCCATGAGTGACATGGAAGACGCAGCGGAAGTCGATCGGGATTTGGCAAA
CCAATTAGAGTCGATTTCTACGAGCTTTTACACTTTGCAAGAAACTGCACATGAACTTAGAAATCGAATAGACGATTTGG
AATTTGACCCTGCCAGATTGGATATTGTCGAGGAAAGACTTGCATTACATATCGCATTAAAACGAAAATATGGGAATACA
ACAGAAGATATTTTAATTTACCGAGATAAAATTGCTGATGAACTTGAAAGTTTGATAAATCGTGATGAACGATTGCTCGT
CGAACAAGAAAAATTAATTCAACTTAAAAAGGATTTAGAAATTGAAGCAGAAGAACTGTCCATTATTCGACGCAATTCAG
CCAAGCAATTAGAAATCGCAATTTTGGAGCAACTTCAACAACTACATATGGAAAAAGCATCATTCAAGGTCATGATAGAC
CGTAAAAAAGGGTTTGACATCACTGGCTACGATGATATTGCATTTCATATTTCTACAAACGTTGGCGAGCCTTTAAAACC
TCTTGTCAAGGTCGCTTCGGGCGGTGAACTATCGCGACTAATGCTGGCATTAAAAACAATATTTTCAAAACATCAAGGAA
TCACTTCGATTATTTTTGATGAGGTGGACACTGGAGTGAGTGGACGAGTCGCACAAGCGATTGCAGAAAAAATTGCAATG
GTTGCGAGTCATTCCCAAGTGCTTTGTATTTCTCATTTACCGCAAGTTGCGGCAATGGCTGATCAGCATTATTTAATCAA
AAAAGAAGTGAAAAACAAAAGAACGACCACCGCAATTGAAAATGTTCATAATAAGGAACGAACAAATGAATTATCACGAA
TGCTTTCCGGCGCAGAAACAACGCCGCTAACGCTAAAACACGCGGAAGAACTCCTGACGCTTGCTGCAGTGAGAAAGAAA
AGTTTCAGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.93

100

0.526