Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JWZ97_RS07055 Genome accession   NZ_CP070491
Coordinates   1691311..1692681 (-) Length   456 a.a.
NCBI ID   WP_205434075.1    Uniprot ID   -
Organism   Methylococcus sp. EFPC2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1686311..1697681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWZ97_RS07035 (JWZ97_07035) - 1686437..1687657 (-) 1221 WP_240342520.1 PAS domain-containing sensor histidine kinase -
  JWZ97_RS07040 (JWZ97_07040) - 1687772..1689172 (-) 1401 WP_205434072.1 sigma-54 dependent transcriptional regulator -
  JWZ97_RS07045 (JWZ97_07045) - 1689330..1690577 (+) 1248 WP_205434073.1 HlyC/CorC family transporter -
  JWZ97_RS07050 (JWZ97_07050) - 1690677..1691294 (+) 618 WP_205434074.1 FHA domain-containing protein -
  JWZ97_RS07055 (JWZ97_07055) radA 1691311..1692681 (-) 1371 WP_205434075.1 DNA repair protein RadA Machinery gene
  JWZ97_RS07060 (JWZ97_07060) - 1692712..1693827 (-) 1116 WP_205434076.1 sorbosone dehydrogenase family protein -
  JWZ97_RS07065 (JWZ97_07065) htpX 1694001..1694885 (+) 885 WP_205434077.1 protease HtpX -
  JWZ97_RS07070 (JWZ97_07070) - 1695177..1696022 (+) 846 WP_205434078.1 HDOD domain-containing protein -
  JWZ97_RS07075 (JWZ97_07075) - 1696092..1697207 (-) 1116 WP_240342521.1 N-acetylmuramoyl-L-alanine amidase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48599.97 Da        Isoelectric Point: 7.4861

>NTDB_id=540178 JWZ97_RS07055 WP_205434075.1 1691311..1692681(-) (radA) [Methylococcus sp. EFPC2]
MSKPKDAKIVYRCTECGHAQTKWAGQCGGCGLWNTLVESIEAKAAPGRYSGYAGSGGELAHPVDLSVVEAEEVSRASSGL
DELDRVLGGGMVAGSAILIGGDPGIGKSTLLLQTLAALAGTVSTLYITGEESIQQVSLRAKRLNLACTGVKILAETSLER
MLAVAREQKHSLLVVDSIQTVYTEVLQSAPGSVAQVRECAAQLVRFAKQSGTTLFLVGHVTKEGALAGPRVLEHMVDTVL
YFEGDPGNRFRVIRAFKNRFGAVNELGVFAMTETGLKEVKNPSAIFLSRYEEDMPGSIVTVMREGSRPLLVEVQALVDES
HLAAPRRVAVGMEGNRLAMLLAVLHRHGGVGILNQDVFINLVGGLRLTETAGDLAVALSVASSLRDRPIPRDWLTFGELG
LSGEVRPVQNGEERLREAAKHGFRHAVAPHKNVPRGGIPGLDIIAVKNLREALAVL

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=540178 JWZ97_RS07055 WP_205434075.1 1691311..1692681(-) (radA) [Methylococcus sp. EFPC2]
ATGAGCAAGCCCAAAGACGCGAAGATCGTATACCGCTGTACCGAGTGTGGCCACGCGCAGACCAAGTGGGCCGGCCAGTG
CGGAGGCTGCGGTTTGTGGAACACGCTGGTGGAAAGCATCGAGGCCAAGGCGGCGCCCGGGCGTTACTCGGGATATGCCG
GAAGCGGCGGCGAGCTCGCGCATCCGGTCGATTTGTCCGTCGTGGAAGCCGAGGAGGTCAGCCGCGCGAGCAGTGGTCTC
GATGAGTTGGACCGGGTGCTGGGCGGCGGCATGGTGGCCGGCTCGGCCATCCTCATCGGCGGCGATCCCGGCATCGGCAA
GTCGACCCTGTTGCTGCAGACCTTGGCCGCTCTGGCCGGGACGGTGAGCACACTGTACATCACCGGCGAGGAATCGATAC
AGCAGGTGAGCCTGCGGGCCAAACGGCTCAATCTGGCCTGCACAGGGGTGAAGATACTGGCGGAAACCTCGCTGGAGCGC
ATGCTGGCGGTCGCCCGGGAACAGAAGCACAGCCTGCTGGTGGTCGACTCCATCCAGACCGTGTACACCGAGGTCCTGCA
ATCTGCGCCGGGATCCGTTGCCCAGGTGCGGGAGTGCGCCGCGCAACTGGTGCGCTTCGCCAAGCAAAGCGGCACGACCC
TGTTCCTCGTGGGTCATGTGACCAAGGAGGGGGCTCTCGCCGGCCCCCGGGTCCTGGAGCACATGGTGGATACGGTGTTG
TACTTCGAGGGCGATCCCGGCAATCGCTTCCGGGTCATCCGCGCCTTCAAGAACCGCTTCGGGGCCGTCAACGAGCTGGG
CGTGTTCGCCATGACGGAGACGGGACTGAAAGAAGTGAAAAATCCGTCGGCGATCTTCCTATCGCGCTACGAGGAAGACA
TGCCGGGCAGCATCGTCACCGTGATGCGCGAGGGGAGCCGGCCCTTGCTGGTCGAAGTCCAGGCCCTGGTTGACGAATCC
CACCTGGCCGCGCCGCGCCGGGTCGCCGTGGGCATGGAGGGCAATCGTCTGGCCATGCTGCTGGCGGTGCTGCACCGGCA
CGGCGGCGTCGGTATCCTCAACCAGGACGTATTCATCAACCTAGTGGGCGGACTGCGCCTGACCGAAACCGCAGGCGATC
TGGCCGTCGCGCTGTCGGTGGCGTCCAGCCTGCGGGATCGGCCGATTCCGCGTGATTGGCTGACTTTCGGGGAGCTGGGT
CTAAGCGGCGAGGTACGGCCGGTGCAAAACGGCGAGGAGCGGCTGCGGGAGGCGGCCAAACACGGGTTCCGTCATGCGGT
CGCACCGCACAAGAACGTCCCCCGCGGCGGCATACCGGGACTGGATATCATAGCGGTCAAGAATTTGCGCGAGGCTCTGG
CGGTGCTCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(11-38)

AAA domain (AAA_25)

(71-224)

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.342

100

0.493
  radA Streptococcus mitis SK321

44.196

98.246

0.434
  radA Streptococcus mitis NCTC 12261

43.75

98.246

0.43
  radA Streptococcus pneumoniae TIGR4

43.4

98.026

0.425
  radA Streptococcus pneumoniae D39

43.4

98.026

0.425
  radA Streptococcus pneumoniae Rx1

43.4

98.026

0.425
  radA Streptococcus pneumoniae R6

43.4

98.026

0.425