Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LL045_RS02395 Genome accession   NZ_CP086083
Coordinates   484842..485483 (-) Length   213 a.a.
NCBI ID   WP_038599355.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP20A     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 479842..490483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL045_RS02375 (LL045_02375) cysK 479856..480788 (-) 933 WP_003131750.1 cysteine synthase A -
  LL045_RS02380 (LL045_02380) - 481006..482091 (+) 1086 WP_038599351.1 LysM peptidoglycan-binding domain-containing protein -
  LL045_RS02385 (LL045_02385) - 482129..482761 (-) 633 WP_038599353.1 MBL fold metallo-hydrolase -
  LL045_RS02390 (LL045_02390) - 482762..484774 (-) 2013 WP_270220034.1 transglycosylase domain-containing protein -
  LL045_RS02395 (LL045_02395) recU 484842..485483 (-) 642 WP_038599355.1 Holliday junction resolvase RecU Machinery gene
  LL045_RS02400 (LL045_02400) - 485564..486088 (+) 525 WP_010905434.1 DUF1273 domain-containing protein -
  LL045_RS02405 (LL045_02405) spx 486248..486634 (+) 387 WP_010905435.1 transcriptional regulator Spx -
  LL045_RS02410 (LL045_02410) - 486725..487006 (+) 282 WP_003131743.1 UPF0223 family protein -
  LL045_RS02415 (LL045_02415) - 486972..487751 (+) 780 WP_038599358.1 inositol monophosphatase family protein -
  LL045_RS02420 (LL045_02420) murA 487845..489125 (+) 1281 WP_038602693.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LL045_RS02425 (LL045_02425) - 489125..489316 (+) 192 WP_394530334.1 DNA-directed RNA polymerase subunit beta -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24365.18 Da        Isoelectric Point: 10.1344

>NTDB_id=540170 LL045_RS02395 WP_038599355.1 484842..485483(-) (recU) [Lactococcus lactis subsp. lactis strain EIP20A]
MVNYPNGRSRAYSTVPKKKKLLTELSVTKKSTSKAKGMVAFGKRGMNFEAEINATNEYYLSRGLAVIHKKPTPIQIVKVD
YPQRSRAKITEAYFRQASTTDYSGVYKGHYIDFEAKETQQKTVFPLKNFHEHQIVHMSNVLAQGGIAFVLLHFARLNETY
LLPSSCLITFYYEKGGLKSIPLSHIRENGYKIETNHIPRIPYLEIVNKLCEVQ

Nucleotide


Download         Length: 642 bp        

>NTDB_id=540170 LL045_RS02395 WP_038599355.1 484842..485483(-) (recU) [Lactococcus lactis subsp. lactis strain EIP20A]
ATGGTTAATTATCCTAATGGAAGGTCGCGAGCTTACAGCACTGTTCCTAAGAAAAAAAAATTACTGACAGAGCTGTCAGT
AACTAAAAAAAGCACCTCAAAAGCCAAAGGGATGGTTGCCTTCGGGAAGCGAGGAATGAATTTTGAAGCTGAAATTAATG
CAACAAATGAGTATTATCTTTCGCGCGGACTTGCAGTTATCCACAAAAAGCCAACACCAATCCAAATCGTTAAAGTAGAT
TATCCACAAAGGAGTCGTGCAAAAATTACAGAAGCTTACTTTAGGCAAGCATCAACTACTGACTACTCTGGAGTCTATAA
AGGTCACTACATCGATTTTGAAGCAAAAGAAACACAGCAAAAAACTGTTTTTCCTCTAAAGAATTTCCATGAGCATCAAA
TTGTTCATATGAGTAATGTTCTCGCTCAAGGGGGAATTGCTTTTGTCCTCTTGCACTTTGCAAGGCTAAATGAAACATAT
CTTCTTCCATCTTCGTGTTTGATTACTTTTTATTACGAAAAAGGCGGTTTAAAGTCAATTCCACTTTCTCATATTCGCGA
AAATGGCTATAAAATTGAAACGAACCACATTCCTAGAATTCCTTATCTAGAAATTGTGAATAAACTTTGTGAGGTACAGT
AA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(44-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

46.919

99.061

0.465