Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   IAI_RS0108015 Genome accession   NZ_AFXJ01000001
Coordinates   1686077..1686673 (+) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa 19BR     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1681077..1691673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAI_RS0107995 - 1681996..1682373 (+) 378 WP_003083354.1 hypothetical protein -
  IAI_RS0108000 - 1682627..1683493 (-) 867 WP_003120462.1 ABC transporter substrate-binding protein -
  IAI_RS0108005 dnaX 1683530..1685626 (+) 2097 WP_031639969.1 DNA polymerase III subunit gamma/tau -
  IAI_RS0108010 - 1685672..1685998 (+) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  IAI_RS0108015 recR 1686077..1686673 (+) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  IAI_RS0108020 - 1686796..1687944 (+) 1149 WP_003103930.1 acyl-CoA dehydrogenase family protein -
  IAI_RS0108025 - 1687957..1688496 (-) 540 WP_003103931.1 CbrC family protein -
  IAI_RS0108030 - 1688570..1689457 (-) 888 WP_003103932.1 SDR family NAD(P)-dependent oxidoreductase -
  IAI_RS0108035 - 1689454..1691037 (-) 1584 WP_003121915.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=54017 IAI_RS0108015 WP_003087237.1 1686077..1686673(+) (recR) [Pseudomonas aeruginosa 19BR]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=54017 IAI_RS0108015 WP_003087237.1 1686077..1686673(+) (recR) [Pseudomonas aeruginosa 19BR]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGTTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48

Multiple sequence alignment