Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   LL045_RS02175 Genome accession   NZ_CP086083
Coordinates   442172..442888 (-) Length   238 a.a.
NCBI ID   WP_058206012.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP20A     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 437172..447888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL045_RS02160 (LL045_02160) cdaA 438867..439745 (+) 879 WP_003131542.1 diadenylate cyclase CdaA -
  LL045_RS02165 (LL045_02165) - 439735..440694 (+) 960 WP_038599257.1 YbbR-like domain-containing protein -
  LL045_RS02170 (LL045_02170) glmM 440740..442098 (+) 1359 WP_058206011.1 phosphoglucosamine mutase -
  LL045_RS02175 (LL045_02175) treR 442172..442888 (-) 717 WP_058206012.1 trehalose operon repressor Regulator
  LL045_RS02180 (LL045_02180) - 442999..443484 (+) 486 WP_104142971.1 PTS glucose transporter subunit IIA -
  LL045_RS02185 (LL045_02185) - 443621..445186 (+) 1566 WP_017864142.1 PTS transporter subunit EIIC -
  LL045_RS02190 (LL045_02190) - 445254..447563 (+) 2310 WP_394530315.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27863.55 Da        Isoelectric Point: 6.4168

>NTDB_id=540168 LL045_RS02175 WP_058206012.1 442172..442888(-) (treR) [Lactococcus lactis subsp. lactis strain EIP20A]
MKKYEVILQDLEKKIFNDIYKTNDILPSENELSVNYESSRSTVRQALKILEEKGLIQRRHGYGSIVLAHDRLLFPISGLT
SYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAVGEHAISILRRRKVDGKFSILDWDLFLEKYSEGLAPEHAKISTY
DYLEDTLGLDIAYAQKEVTIDFACEDDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=540168 LL045_RS02175 WP_058206012.1 442172..442888(-) (treR) [Lactococcus lactis subsp. lactis strain EIP20A]
ATGAAGAAATATGAAGTGATTTTGCAAGATTTAGAAAAAAAGATTTTTAACGATATCTATAAAACGAACGATATTCTTCC
GAGTGAAAATGAGCTCTCTGTTAATTACGAGAGCAGTCGTTCAACAGTCAGACAGGCTTTAAAAATTTTAGAAGAGAAAG
GGCTTATTCAAAGACGACATGGCTATGGTAGCATTGTCCTCGCTCACGATAGGCTCCTTTTCCCTATCTCTGGCTTAACT
TCATACAAAGAACTACAAACCTCTATGGGTTTCCATAGTGAAACTGAGGTCATTCGCTTTGAAAGACTTGAAATTAACCC
TAAACTTTCAGAAACAACTGGTTTTGCCGTTGGGGAACATGCCATAAGTATTCTCAGAAGGCGCAAAGTAGATGGCAAAT
TTTCAATTTTAGATTGGGATTTATTTTTAGAAAAATATTCCGAAGGTTTAGCTCCAGAACATGCTAAAATTTCAACCTAT
GACTACTTAGAAGATACTCTAGGGCTTGACATTGCCTATGCCCAAAAGGAAGTCACAATTGATTTTGCCTGTGAAGATGA
CTTTAAATACCTTGACTTAAATCCCAAAGACCATCATGTCGTGTCTGTCAAATCTCATGTTTATCTTGCTGATAATACTC
TTTTTCAATATACTGAATCTCGACATCAAGTCGACCGCTTTCGTTTCACAGAATTTGCTAGACGACAAAAAAGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(89-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

45.992

99.58

0.458