Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JTI58_RS24235 Genome accession   NZ_CP070490
Coordinates   4901092..4902783 (-) Length   563 a.a.
NCBI ID   WP_205444246.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain NEB1292     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4896092..4907783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTI58_RS24215 (JTI58_24215) - 4896492..4898063 (-) 1572 WP_205444243.1 FapA family protein -
  JTI58_RS24220 (JTI58_24220) - 4898353..4898520 (-) 168 WP_205444244.1 hypothetical protein -
  JTI58_RS24225 (JTI58_24225) spo0A 4898845..4899636 (-) 792 WP_016993890.1 sporulation transcription factor Spo0A -
  JTI58_RS24230 (JTI58_24230) - 4900022..4900969 (-) 948 WP_205444245.1 SpoIVB peptidase S55 domain-containing protein -
  JTI58_RS24235 (JTI58_24235) recN 4901092..4902783 (-) 1692 WP_205444246.1 DNA repair protein RecN Machinery gene
  JTI58_RS24240 (JTI58_24240) argR 4902817..4903266 (-) 450 WP_004231170.1 transcriptional regulator ArgR -
  JTI58_RS24245 (JTI58_24245) - 4903367..4904185 (-) 819 WP_205444247.1 TlyA family RNA methyltransferase -
  JTI58_RS24250 (JTI58_24250) dxs 4904185..4906086 (-) 1902 WP_205444248.1 1-deoxy-D-xylulose-5-phosphate synthase -
  JTI58_RS24255 (JTI58_24255) - 4906250..4907131 (-) 882 WP_205444249.1 polyprenyl synthetase family protein -
  JTI58_RS24260 (JTI58_24260) xseB 4907135..4907368 (-) 234 WP_008179899.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63454.30 Da        Isoelectric Point: 4.6214

>NTDB_id=540168 JTI58_RS24235 WP_205444246.1 4901092..4902783(-) (recN) [Lysinibacillus fusiformis strain NEB1292]
MLRELSIRNFAIIEDLTVSFLEGLTVLTGETGAGKSIIIDAVHLLAGGRGNTEFIRHGARKAELGGLFQISSSVHPVLKK
LEEAGIEIEEDTIILRRDLNDTGKSICRVNGKLVPLSVLRDIGASLIDIHGQHENQELMDEKQHINLLDQFAEEELLPIQ
KTYRAQYDEYRLLKKDLASISIDEQLMAQRIDLYQFQIKELDEANLKLGEEDELLDERRRLMNFNKIFERSSAAYEAIQG
ETKGLDWIGTAMGALEDAATVDEQFKESSEAVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALLQNLKRKYGTT
VEEILAYYEKIKTELNELLNRDEILQVKERRVLEMEAVLNELASELSTVRKAAAQQLSEAIMAELRELHMEKAKFIVNFD
ELSYFDANGKDQIIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISVNSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLSEIDQDARIEEVSRMMSGTEITALTLQHATELLKMADERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=540168 JTI58_RS24235 WP_205444246.1 4901092..4902783(-) (recN) [Lysinibacillus fusiformis strain NEB1292]
GTGTTAAGAGAGCTTAGTATTCGAAACTTTGCCATCATTGAGGATTTGACTGTCAGCTTTTTAGAAGGCTTAACAGTTCT
CACAGGGGAAACAGGTGCCGGAAAATCCATTATCATTGATGCGGTGCATTTACTTGCTGGTGGACGAGGCAACACTGAAT
TTATTCGACATGGCGCAAGAAAAGCAGAATTGGGTGGCTTATTTCAAATTTCGAGTTCAGTACATCCTGTTCTGAAAAAG
TTAGAAGAAGCAGGCATTGAAATAGAAGAAGATACGATTATTTTACGTCGTGATTTAAATGATACGGGTAAAAGTATTTG
CCGTGTGAATGGAAAGCTTGTGCCATTATCGGTACTAAGAGACATTGGAGCTAGTCTTATTGATATTCATGGCCAACATG
AAAATCAAGAGCTAATGGATGAAAAGCAGCACATCAATTTGCTCGACCAGTTTGCAGAAGAAGAGCTATTGCCCATTCAA
AAAACGTATCGTGCTCAGTACGATGAATACCGTTTACTCAAAAAAGACTTAGCTTCCATATCCATTGATGAGCAATTGAT
GGCACAACGTATCGATTTGTATCAATTTCAAATCAAAGAGTTGGACGAAGCCAATTTAAAATTAGGCGAGGAAGACGAGC
TTCTAGACGAACGCCGTCGTCTGATGAATTTTAATAAAATTTTTGAACGCTCTAGTGCAGCCTATGAAGCCATTCAAGGC
GAAACAAAAGGGCTTGATTGGATCGGTACGGCAATGGGTGCTTTAGAAGACGCTGCAACGGTTGATGAGCAATTTAAAGA
ATCGTCTGAGGCAGTTACAACTGCGTTTTATGCATTGCAGGATGCAGCCTATCAGGTCAAAAATGTGTTAGATGAATTAG
AATTTGATCCAGCTCGTTTAAACGAGGTGGAGCAACGTTTAGCATTATTGCAAAATTTAAAACGCAAGTATGGTACAACA
GTAGAAGAAATCTTGGCTTATTATGAAAAAATTAAAACTGAGTTAAATGAGCTGTTGAATCGCGATGAAATTTTGCAGGT
GAAAGAACGACGCGTGTTAGAAATGGAAGCTGTACTCAATGAGTTGGCTAGTGAACTTTCAACAGTACGTAAAGCTGCAG
CCCAACAATTAAGTGAAGCGATTATGGCAGAACTACGTGAATTACATATGGAAAAGGCAAAATTTATTGTCAATTTTGAT
GAATTATCCTATTTCGATGCTAATGGGAAAGATCAAATTATTTTCTACATCTCCACAAACGTTGGAGAGCCTCCAAAGTC
TTTACCAAAAATTGCATCTGGCGGAGAATTATCACGAATGATGCTGGCATTGAAAACCATTTTCTCTTCTTCCAATGGAA
TTACCTCCATTATTTTTGATGAGGTGGATACAGGTGTCAGTGGTCGTGTGGCGCAAGCGATTGCAGAAAAAATTGCCGCG
ATTTCTGTAAATTCTCAAGTTTTATGTATTTCACATTTACCACAAGTTGCTGCGATGGCCGATCATCATTACTTCATCAA
AAAAGAAGTGGAACACGATCGAACATTTACTTCATTATCAGAGATTGATCAAGACGCTCGTATAGAGGAAGTAAGCCGTA
TGATGTCTGGAACCGAAATTACAGCGTTAACATTACAGCATGCAACGGAGCTATTAAAAATGGCAGATGAACGAAAAAAA
CAAATGCGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.34

100

0.536