Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LL045_RS00215 Genome accession   NZ_CP086083
Coordinates   42447..43202 (+) Length   251 a.a.
NCBI ID   WP_058205599.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP20A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 37447..48202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL045_RS00200 (LL045_00200) - 38272..39447 (+) 1176 WP_394530261.1 pyridoxal phosphate-dependent aminotransferase -
  LL045_RS00205 (LL045_00205) - 39617..41038 (+) 1422 WP_394530262.1 GW dipeptide domain-containing protein -
  LL045_RS00210 (LL045_00210) - 41041..42225 (+) 1185 WP_394530263.1 hypothetical protein -
  LL045_RS00215 (LL045_00215) recO 42447..43202 (+) 756 WP_058205599.1 DNA repair protein RecO Machinery gene
  LL045_RS00220 (LL045_00220) - 43316..44197 (+) 882 WP_058219502.1 Rgg/GadR/MutR family transcriptional regulator -
  LL045_RS00225 (LL045_00225) - 44429..45706 (+) 1278 WP_394530264.1 radical SAM protein -
  LL045_RS00230 (LL045_00230) - 45710..47272 (+) 1563 WP_394530265.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28689.87 Da        Isoelectric Point: 5.9537

>NTDB_id=540153 LL045_RS00215 WP_058205599.1 42447..43202(+) (recO) [Lactococcus lactis subsp. lactis strain EIP20A]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGVSLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=540153 LL045_RS00215 WP_058205599.1 42447..43202(+) (recO) [Lactococcus lactis subsp. lactis strain EIP20A]
ATGCGTGATGCCGAAACTCAAGGTCTAGTACTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCCCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGGTTTCATTGAACTTCTCAGAATGTGCATTTTGTCATAAAACCGTTGGC
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GATGGAATGTCTGGGTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.065

98.008

0.53