Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JTI58_RS08235 Genome accession   NZ_CP070490
Coordinates   1649559..1650935 (-) Length   458 a.a.
NCBI ID   WP_205446183.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain NEB1292     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1644559..1655935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTI58_RS08215 (JTI58_08215) ispF 1645629..1646105 (-) 477 WP_205446178.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  JTI58_RS08220 (JTI58_08220) epsC 1646247..1647188 (-) 942 WP_205446179.1 serine O-acetyltransferase EpsC -
  JTI58_RS08225 (JTI58_08225) ispD 1647482..1648177 (-) 696 WP_205446180.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  JTI58_RS08230 (JTI58_08230) - 1648189..1649274 (-) 1086 WP_205446181.1 PIN/TRAM domain-containing protein -
  JTI58_RS08235 (JTI58_08235) radA 1649559..1650935 (-) 1377 WP_205446183.1 DNA repair protein RadA Machinery gene
  JTI58_RS08240 (JTI58_08240) - 1651027..1653471 (-) 2445 WP_205446185.1 ATP-dependent Clp protease ATP-binding subunit -
  JTI58_RS08245 (JTI58_08245) - 1653461..1654570 (-) 1110 WP_205446186.1 protein arginine kinase -
  JTI58_RS08250 (JTI58_08250) - 1654567..1655109 (-) 543 WP_205446188.1 UvrB/UvrC motif-containing protein -
  JTI58_RS08255 (JTI58_08255) - 1655123..1655593 (-) 471 WP_004233573.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50219.10 Da        Isoelectric Point: 7.6631

>NTDB_id=540140 JTI58_RS08235 WP_205446183.1 1649559..1650935(-) (radA) [Lysinibacillus fusiformis strain NEB1292]
MAKKKTKFVCSGCGYESAKWMGRCPGCGEWNKMVEEVEMVAKGPRGAFQHSATVTQKAIPIIQVEATEESRVATEMGELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNKGHRVLYISGEESIRQTKLRAERLGVISQELYIYSETNLEFLNQ
TIDEVKPKFVIVDSIQTVFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSQGAAGSTIVASMEGTRPILVEIQSLVTPTSFN
YPKRMATGVDQNRVQLLMAVLEKRMGLMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVRATDCFIGEVGLTG
EVRRVSRIEQRVIEAAKLGFKRAFIPASNIGGWEFPQGIEIFGVETIKDALNACFREL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=540140 JTI58_RS08235 WP_205446183.1 1649559..1650935(-) (radA) [Lysinibacillus fusiformis strain NEB1292]
TTGGCAAAGAAAAAAACGAAATTTGTATGTTCAGGCTGTGGCTATGAATCTGCAAAATGGATGGGAAGATGCCCTGGATG
TGGTGAGTGGAATAAAATGGTCGAAGAAGTGGAGATGGTTGCGAAAGGTCCACGTGGAGCATTTCAACATTCTGCTACAG
TTACCCAAAAGGCAATTCCGATTATCCAGGTTGAAGCTACTGAGGAATCCCGTGTAGCGACGGAGATGGGCGAACTCAAT
CGTGTATTGGGTGGTGGTATTGTGCCTGGTTCTCTAGTATTAATTGGGGGCGATCCTGGGATAGGAAAATCAACATTACT
ATTACAAGTTTCCGCATTACTTTCGAATAAAGGGCATCGCGTACTTTATATTTCTGGAGAGGAATCCATTCGTCAAACTA
AATTACGAGCAGAGCGTTTAGGGGTGATTTCTCAAGAGCTTTACATATACTCCGAAACGAACCTAGAGTTTTTAAACCAA
ACCATTGATGAAGTCAAACCTAAGTTTGTCATTGTCGATTCCATTCAAACGGTCTTTCATCCAGAAGTAACAAGCGCACC
AGGTAGTGTATCACAGGTTCGTGAATGTACAGCAGAGCTTATGCGAATCGCTAAAACAAAAGGCATTGCTATTTTTCTAG
TAGGGCATGTAACAAAAGAGGGGCAAATTGCTGGGCCTCGTATTTTAGAGCATATGGTTGATACTGTACTGTATTTTGAA
GGGGAAAGACATCATAATCATCGTATTTTACGAAGCCAAAAAAACCGCTTTGGCTCTACAAATGAAATTGCCATATTTGA
GATGCTTCAAGGAGGTTTAAAGGAAGTTCTAAACCCTTCAGAGTTATTTTTACAGGAGCGTTCACAGGGTGCAGCGGGTT
CAACTATTGTTGCATCAATGGAGGGGACAAGACCAATCCTTGTGGAAATTCAATCCTTAGTTACACCTACAAGCTTTAAC
TATCCTAAACGTATGGCAACGGGTGTCGATCAAAACAGAGTACAATTGCTAATGGCTGTACTGGAAAAGCGTATGGGCCT
CATGCTACAAGCTCAGGACGCATATATTAAAGTTGCTGGTGGTGTCAAATTGGATGAGCCAGCAATAGATTTAGCGGTGT
TGACGAGCATTGTATCTAGTTTTAAGGATCAGGCAGTGCGTGCAACCGATTGTTTTATTGGTGAGGTAGGGCTGACAGGT
GAAGTCCGCCGAGTGTCACGTATAGAGCAGCGAGTCATTGAAGCAGCGAAGCTTGGATTTAAAAGAGCTTTCATTCCAGC
TTCGAATATTGGGGGCTGGGAATTTCCACAGGGAATTGAAATTTTTGGCGTAGAAACGATAAAAGATGCATTAAATGCTT
GTTTTAGAGAGTTGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-221)

Subunit ChlI of Mg-chelatase (ChlI)

(346-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.925

99.127

0.703
  radA Streptococcus pneumoniae Rx1

62.061

99.563

0.618
  radA Streptococcus pneumoniae D39

62.061

99.563

0.618
  radA Streptococcus pneumoniae R6

62.061

99.563

0.618
  radA Streptococcus pneumoniae TIGR4

62.061

99.563

0.618
  radA Streptococcus mitis NCTC 12261

62.061

99.563

0.618
  radA Streptococcus mitis SK321

62.061

99.563

0.618