Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   JTI58_RS06445 Genome accession   NZ_CP070490
Coordinates   1295339..1296289 (-) Length   316 a.a.
NCBI ID   WP_004231947.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain NEB1292     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1290339..1301289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTI58_RS06420 (JTI58_06420) - 1290994..1291539 (+) 546 WP_205445936.1 hypothetical protein -
  JTI58_RS06425 (JTI58_06425) - 1292226..1292540 (-) 315 WP_205445937.1 antibiotic biosynthesis monooxygenase -
  JTI58_RS06430 (JTI58_06430) - 1292542..1293570 (-) 1029 WP_205445938.1 siderophore ABC transporter substrate-binding protein -
  JTI58_RS06435 (JTI58_06435) - 1293635..1294396 (-) 762 WP_205445939.1 ABC transporter ATP-binding protein -
  JTI58_RS06440 (JTI58_06440) - 1294393..1295346 (-) 954 WP_205445940.1 iron chelate uptake ABC transporter family permease subunit -
  JTI58_RS06445 (JTI58_06445) ceuB 1295339..1296289 (-) 951 WP_004231947.1 ABC transporter permease Machinery gene
  JTI58_RS06450 (JTI58_06450) - 1296574..1297626 (-) 1053 WP_205445941.1 hypothetical protein -
  JTI58_RS06455 (JTI58_06455) menC 1297679..1298785 (-) 1107 WP_205445942.1 o-succinylbenzoate synthase -
  JTI58_RS06460 (JTI58_06460) - 1298807..1299631 (-) 825 WP_205445943.1 GNAT family N-acetyltransferase -
  JTI58_RS06465 (JTI58_06465) - 1299631..1300776 (-) 1146 WP_205445944.1 M20 peptidase aminoacylase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34796.00 Da        Isoelectric Point: 10.1980

>NTDB_id=540139 JTI58_RS06445 WP_004231947.1 1295339..1296289(-) (ceuB) [Lysinibacillus fusiformis strain NEB1292]
MKIRYLLTATVVLSIVSLFIGVVDIKPSDLLDFQSEEARLFLISRVPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATRLGVLISMMFFTNVTYFQKISFAFIFALAGTLLFMQILNRIKFKDAIFIPLIGLMFGNILSSVTTFFAYKANII
QNISAWLQGDFSLIMKGRYELLYVSVPILILAYIYANRFTVAGMGEDFAKNLGLSYKFVVNLGLVLVALISTTVVLTVGI
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLFCDILGRVLIFPYEIPISMTVGVIGSAIFLFMLFRGRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=540139 JTI58_RS06445 WP_004231947.1 1295339..1296289(-) (ceuB) [Lysinibacillus fusiformis strain NEB1292]
ATGAAAATAAGATATCTTTTAACAGCAACTGTTGTGCTGTCTATTGTGTCGCTATTTATCGGAGTAGTAGATATTAAGCC
TAGCGACCTATTAGACTTCCAATCAGAAGAAGCTAGACTATTTTTAATTAGTCGTGTACCTAGACTTGTTGCAATCTTGC
TAGCAGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAATTCGTATCACCAACAACAGCT
GGTACATTAGATGCCACACGGTTGGGCGTATTGATTTCAATGATGTTCTTTACGAACGTCACATATTTCCAAAAAATTTC
CTTCGCTTTCATATTTGCTTTAGCCGGCACATTACTATTCATGCAAATATTAAACCGAATTAAGTTTAAAGATGCGATTT
TTATACCGCTTATTGGCTTAATGTTTGGGAATATATTGTCCTCTGTGACAACGTTCTTTGCATACAAGGCAAATATTATC
CAGAACATTTCAGCATGGTTACAAGGAGATTTCTCATTAATCATGAAAGGCCGTTATGAACTGTTATACGTAAGTGTACC
GATACTCATTTTAGCTTACATTTACGCAAATCGTTTTACAGTAGCTGGGATGGGAGAGGATTTTGCAAAAAACCTTGGTC
TATCCTATAAATTTGTGGTCAATTTAGGCTTAGTGTTGGTAGCTCTTATCTCCACGACAGTGGTGCTAACAGTCGGTATC
ATTCCCTTCCTTGGTTTGATTATTCCGAACATTATTTCACTGTTCAAAGGTGATAATTTGGCGAAAACCTTGCCGCATAC
AGCCTTACTTGGTATGTCATTCTTATTATTCTGCGATATTTTAGGACGAGTACTGATTTTCCCTTATGAAATACCAATTA
GTATGACTGTTGGTGTAATTGGAAGTGCCATCTTCCTATTCATGTTGTTTAGGGGGAGAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.848

100

0.528