Detailed information NTG0054013

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: BN117_RS04540
• Genome accession: NC_018828
• Coordinates: 967195..968367 (+)
• Length: 390 a.a.
• NCBI ID: WP_231860015.1
• Uniprot ID: -
• Organism: Bordetella parapertussis Bpp5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 962195..973367

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BN117_RS04515 (BN117_0883)	-	964061..964447 (+)	387	WP_003808567.1	MOSC N-terminal beta barrel domain-containing protein	-
BN117_RS04520 (BN117_0884)	-	964455..965672 (-)	1218	WP_015039068.1	benzoate/H(+) symporter BenE family transporter	-
BN117_RS04525 (BN117_0885)	-	965669..965920 (-)	252	WP_003808570.1	YfhL family 4Fe-4S dicluster ferredoxin	-
BN117_RS04530 (BN117_0886)	coaD	965975..966484 (-)	510	WP_003808574.1	pantetheine-phosphate adenylyltransferase	-
BN117_RS04535 (BN117_0887)	rsmD	966505..967125 (-)	621	WP_003808577.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
BN117_RS04540 (BN117_0888)	pilA	967195..968367 (+)	1173	WP_231860015.1	signal recognition particle-docking protein FtsY	Machinery gene
BN117_RS04545 (BN117_0889)	-	968414..970012 (-)	1599	WP_010925999.1	CYTH and CHAD domain-containing protein	-
BN117_RS04550 (BN117_0890)	phnE	970157..970975 (-)	819	WP_015039070.1	phosphonate ABC transporter, permease protein PhnE	-
BN117_RS04555 (BN117_0891)	phnE	970972..971850 (-)	879	WP_197538248.1	phosphonate ABC transporter, permease protein PhnE	-
BN117_RS04560 (BN117_0892)	phnC	971868..972636 (-)	769	Protein_918	phosphonate ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 40733.70 Da
• Isoelectric Point: 6.1602

>NTDB_id=54013 BN117_RS04540 WP_231860015.1 967195..968367(+) (pilA) [Bordetella parapertussis Bpp5]
MPMFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPAPMPAPQPEPQPQQPPEPAPPAMASPPVAEPQPPVA
AAPEAPRKASWLSRLKQGLSRTGQNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKERIDDPAQVK
TALRQLLADHLRPLERSFDLGRAQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNN
VTVISQDGGDPAAVAFDSVNAGRARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALA
QIRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD

Nucleotide

• Length: 1173 bp

>NTDB_id=54013 BN117_RS04540 WP_231860015.1 967195..968367(+) (pilA) [Bordetella parapertussis Bpp5]
TTGCCCATGTTCAGCTTCTTCAAGAAAAAATCCCCTCCGCCCGCCGCGCCGGCCCAGCCCGCGCCGCCGCCGGAGGCAGT
GGACGCAGGGTCAGCCGCACCTGCGCAGCCTCAACCCGCCGAGCCGCAACCGGCCCCGATGCCGGCCCCCCAGCCCGAGC
CGCAGCCGCAACAACCGCCCGAGCCGGCGCCGCCGGCCATGGCGTCGCCGCCTGTCGCCGAGCCGCAGCCACCGGTCGCG
GCCGCGCCCGAGGCGCCCCGCAAGGCCTCGTGGCTGAGCCGGCTCAAACAGGGCCTGTCGCGCACCGGCCAGAACATCGG
CGGGCTGTTCGTCGGCGTGAAGGTCGACGAGAACCTGTTCGAGGAACTGGAGTCGGCGCTGATCATGGCCGACGCGGGCA
TCGAGGCCACCGAGAAACTGCTGGCCGCGCTGCGCGCGCGCGTCAAGAAAGAGCGCATCGACGATCCGGCGCAGGTCAAG
ACGGCGCTGCGCCAATTGCTGGCCGACCATCTGCGGCCGCTGGAGCGGTCCTTCGACCTGGGGCGGGCCCAGCCCCTGGT
GGTCATGATCGCCGGCGTCAACGGCGCGGGCAAGACGACCTCGATCGGCAAGCTGGCGCATACCTTCCAGCGCCAGGGCG
CCAGCGTGCTGCTGGCGGCCGGGGACACCTTCCGCGCGGCGGCGCGCGAGCAATTGGTCGAATGGGGCAGCCGCAACAAT
GTGACCGTGATCTCGCAGGATGGCGGCGATCCGGCCGCGGTGGCGTTCGACTCGGTCAATGCCGGACGTGCGCGCAACGT
GGGCGTGGTGATGGTGGATACGGCCGGCCGCCTGCCCACGCAGCTGCACCTGATGGAAGAATTGAAGAAGATCCGCCGCG
TCATCGGCAAGGCCGAGGCCAGCGCGCCGCATGAAGTGCTGCTGGTGGTCGATGGCAACACCGGCCAGAACGCGCTGGCG
CAAATCCGCGCCTTCGACGCCGCCATCACCCTCACCGGCCTGGTCGTCACCAAGCTGGACGGCACCGCCAAGGGCGGCAC
GCTGGCGGCCGTGGCCGCCGGCAGCCAGGGCGTGCGGCCCATCCCGGTCTATTGGATCGGCGTGGGCGAGGGGTTGGAGG
ACCTGCAGCCCTTCGTGGCCGACGAGTTCGCCGCCGCCCTGCTGGCCGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (186-388)

• SRP54-type protein, helical bundle domain (SRP54_N) (106-165)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	47.529	100	0.518