Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   JWY35_RS12790 Genome accession   NZ_CP070485
Coordinates   2376310..2377380 (-) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus subtilis strain JNFE1126     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2371310..2382380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWY35_RS12745 (JWY35_12635) tapA 2371789..2372550 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  JWY35_RS12750 (JWY35_12640) yqzG 2372822..2373148 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  JWY35_RS12755 (JWY35_12645) spoIITA 2373190..2373369 (-) 180 WP_014480252.1 YqzE family protein -
  JWY35_RS12760 (JWY35_12650) comGG 2373440..2373814 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  JWY35_RS12765 (JWY35_12655) comGF 2373815..2374198 (-) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  JWY35_RS12770 (JWY35_12660) comGE 2374224..2374571 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  JWY35_RS12775 (JWY35_12665) comGD 2374555..2374986 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  JWY35_RS12780 (JWY35_12670) comGC 2374976..2375272 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  JWY35_RS12785 (JWY35_12675) comGB 2375286..2376323 (-) 1038 WP_031600685.1 comG operon protein ComGB Machinery gene
  JWY35_RS12790 (JWY35_12680) comGA 2376310..2377380 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  JWY35_RS12795 (JWY35_12685) - 2377592..2377789 (-) 198 WP_014480259.1 CBS domain-containing protein -
  JWY35_RS12800 (JWY35_12690) corA 2377791..2378744 (-) 954 WP_014480260.1 magnesium transporter CorA -
  JWY35_RS12805 (JWY35_12695) yqhB 2378886..2380214 (+) 1329 WP_014480261.1 hemolysin family protein -
  JWY35_RS12810 (JWY35_12700) rsbRD 2380267..2381103 (-) 837 WP_014480262.1 RsbT co-antagonist protein RsbRD -
  JWY35_RS12820 (JWY35_12710) mgsR 2381327..2381707 (-) 381 WP_003230147.1 transcriptional regulator MgsR -
  JWY35_RS12825 (JWY35_12715) yqgY 2381939..2382184 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=540100 JWY35_RS12790 WP_004399124.1 2376310..2377380(-) (comGA) [Bacillus subtilis strain JNFE1126]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=540100 JWY35_RS12790 WP_004399124.1 2376310..2377380(-) (comGA) [Bacillus subtilis strain JNFE1126]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAAGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGGCTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCAACTGGTTCAGGGAAGACTACCACACTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATTGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGTCGCCAGTCAC
GAAATACCAGGAGAGCTAGCGTTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGGAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1