Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   JQX68_RS14140 Genome accession   NZ_CP070483
Coordinates   2765464..2766210 (-) Length   248 a.a.
NCBI ID   WP_136654296.1    Uniprot ID   -
Organism   Bacillus sp. LJBS06     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2760464..2771210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQX68_RS14115 (JQX68_14115) mreC 2760871..2761743 (-) 873 WP_040082268.1 rod shape-determining protein MreC -
  JQX68_RS14120 (JQX68_14120) mreB 2761774..2762787 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  JQX68_RS14125 (JQX68_14125) radC 2762879..2763574 (-) 696 WP_014664850.1 DNA repair protein RadC -
  JQX68_RS14130 (JQX68_14130) - 2763611..2764180 (-) 570 WP_040082267.1 Maf family nucleotide pyrophosphatase -
  JQX68_RS14135 (JQX68_14135) - 2764332..2765330 (-) 999 WP_147772315.1 SPOR domain-containing protein -
  JQX68_RS14140 (JQX68_14140) comC 2765464..2766210 (-) 747 WP_136654296.1 A24 family peptidase Machinery gene
  JQX68_RS14145 (JQX68_14145) - 2766350..2767642 (-) 1293 WP_147772316.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  JQX68_RS14150 (JQX68_14150) valS 2767702..2770344 (-) 2643 WP_014664855.1 valine--tRNA ligase -
  JQX68_RS14155 (JQX68_14155) - 2770792..2770983 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26545.15 Da        Isoelectric Point: 10.1313

>NTDB_id=540030 JQX68_RS14140 WP_136654296.1 2765464..2766210(-) (comC) [Bacillus sp. LJBS06]
MLFILFIFGLILGSFYYTAGRRIPLHLSIIAPRSSCSFCRRALTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGMSLELLTAVVFLSLLIIVAVTDLHYMLIPNRILIFFLPFLVAARLISPLDSWYAGLLGAAAGFLFLALI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGSAAVLTGRLAKKQPLPFAPAIAAGSILTYLYGNSIIS
FYIKMASG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=540030 JQX68_RS14140 WP_136654296.1 2765464..2766210(-) (comC) [Bacillus sp. LJBS06]
ATGCTATTCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGACGCCGTATCCCCTTACATCT
ATCTATTATCGCGCCCCGTTCATCATGCTCGTTTTGCCGGCGGGCTTTGACCCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCGGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCATGTCGCTGGAATTGTTAACCGCTGTCGTGTTTCTCTCTCTTCTCAT
TATTGTTGCAGTGACAGATCTTCATTATATGCTGATTCCAAATCGAATATTGATTTTTTTCCTTCCCTTTTTGGTCGCTG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCTGCAGCCGGATTTCTATTTCTGGCTTTAATT
GCCGCAATCACTCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCGGCTGCCTTTTTCTTTTCTGTTTTGATAGGCGCATTGTACGGGTCGGCAGCTGTTCTGACTGGTAGACTCGCCA
AAAAGCAGCCGCTTCCCTTTGCCCCTGCAATAGCGGCAGGGAGTATTTTAACCTATTTATATGGGAACTCTATCATTTCG
TTTTATATCAAAATGGCATCGGGATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

93.145

100

0.931