Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JQX68_RS13190 Genome accession   NZ_CP070483
Coordinates   2592202..2592612 (-) Length   136 a.a.
NCBI ID   WP_147772261.1    Uniprot ID   -
Organism   Bacillus sp. LJBS06     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2587202..2597612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQX68_RS13160 (JQX68_13160) - 2587642..2588160 (-) 519 WP_003226126.1 YqeG family HAD IIIA-type phosphatase -
  JQX68_RS13165 (JQX68_13165) - 2588522..2588662 (+) 141 WP_003226124.1 sporulation histidine kinase inhibitor Sda -
  JQX68_RS13170 (JQX68_13170) - 2588968..2589699 (-) 732 WP_014664678.1 SGNH/GDSL hydrolase family protein -
  JQX68_RS13175 (JQX68_13175) - 2590132..2590758 (+) 627 WP_147772260.1 TVP38/TMEM64 family protein -
  JQX68_RS13180 (JQX68_13180) - 2590905..2591210 (-) 306 Protein_2561 NAD(P)-binding domain-containing protein -
  JQX68_RS13185 (JQX68_13185) - 2591447..2592169 (+) 723 WP_103032335.1 hypothetical protein -
  JQX68_RS13190 (JQX68_13190) nucA/comI 2592202..2592612 (-) 411 WP_147772261.1 sporulation-specific Dnase NucB Machinery gene
  JQX68_RS13195 (JQX68_13195) sigK 2592809..2593537 (+) 729 WP_013308023.1 RNA polymerase sporulation sigma factor SigK -
  JQX68_RS13200 (JQX68_13200) - 2593640..2593739 (-) 100 Protein_2565 recombinase -
  JQX68_RS21740 - 2593700..2593875 (-) 176 Protein_2566 hypothetical protein -
  JQX68_RS13205 (JQX68_13205) psiE 2594417..2594833 (-) 417 WP_003246154.1 phosphate-starvation-inducible protein PsiE -
  JQX68_RS13210 (JQX68_13210) yrkQ 2594878..2596176 (-) 1299 WP_147772262.1 two-component system sensor histidine kinase YrkQ -
  JQX68_RS13215 (JQX68_13215) yrkP 2596163..2596858 (-) 696 WP_147772263.1 two-component response regulator YrkP -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15072.06 Da        Isoelectric Point: 4.9204

>NTDB_id=540026 JQX68_RS13190 WP_147772261.1 2592202..2592612(-) (nucA/comI) [Bacillus sp. LJBS06]
MKKWMAGLFLAAAVLLYVMVPQQIQGASLYDKVLYFPLSRYPETGDHIRDAIAEGHSEICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=540026 JQX68_RS13190 WP_147772261.1 2592202..2592612(-) (nucA/comI) [Bacillus sp. LJBS06]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTATGTAATGGTTCCGCAGCAGATCCAAGGCGC
TTCTTTGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACAGGCGATCATATTAGAGATGCGATTGCAG
AGGGACATTCTGAGATTTGCACCATAGATAGAGATGGAGCAGACAAAAGGCGGGAGGAATCATTAAAGGGTATTCCGACT
AAGCCGGGCTATGATCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGAGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGTGCCGGCTCATGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.667

88.235

0.544