Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JQX68_RS08205 Genome accession   NZ_CP070483
Coordinates   1583935..1584213 (+) Length   92 a.a.
NCBI ID   WP_014663823.1    Uniprot ID   -
Organism   Bacillus sp. LJBS06     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1578935..1589213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQX68_RS08185 (JQX68_08185) - 1580123..1581034 (+) 912 WP_147771852.1 ketopantoate reductase family protein -
  JQX68_RS08190 (JQX68_08190) - 1581067..1582299 (-) 1233 WP_147771853.1 aminopeptidase -
  JQX68_RS08195 (JQX68_08195) - 1582410..1582544 (-) 135 WP_003238865.1 protein YkpC -
  JQX68_RS08200 (JQX68_08200) mreBH 1582645..1583652 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  JQX68_RS08205 (JQX68_08205) abrB 1583935..1584213 (+) 279 WP_014663823.1 transcriptional regulator AbhA Regulator
  JQX68_RS08210 (JQX68_08210) kinC 1584404..1585690 (+) 1287 WP_040083258.1 two-component sensor histidine kinase KinC -
  JQX68_RS08215 (JQX68_08215) - 1585706..1586563 (+) 858 WP_147771854.1 gamma-glutamylcyclotransferase -
  JQX68_RS08220 (JQX68_08220) ktrC 1586595..1587260 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  JQX68_RS08225 (JQX68_08225) ade 1587415..1589148 (+) 1734 WP_147771855.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10242.04 Da        Isoelectric Point: 5.8742

>NTDB_id=540005 JQX68_RS08205 WP_014663823.1 1583935..1584213(+) (abrB) [Bacillus sp. LJBS06]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKDYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=540005 JQX68_RS08205 WP_014663823.1 1583935..1584213(+) (abrB) [Bacillus sp. LJBS06]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTTATGCCGATAGAGTTAAGACGGGCACTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGATTACGGCAACGGCAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576