Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   JQX68_RS08085 Genome accession   NZ_CP070483
Coordinates   1559854..1560438 (+) Length   194 a.a.
NCBI ID   WP_014663802.1    Uniprot ID   -
Organism   Bacillus sp. LJBS06     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1554854..1565438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQX68_RS08055 (JQX68_08055) dapD 1555050..1555760 (+) 711 WP_014663797.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  JQX68_RS08060 (JQX68_08060) - 1555830..1556954 (+) 1125 WP_014663798.1 N-acetyldiaminopimelate deacetylase -
  JQX68_RS08065 (JQX68_08065) - 1557016..1557261 (+) 246 WP_003232382.1 YkuS family protein -
  JQX68_RS08070 (JQX68_08070) mscT 1557297..1558100 (-) 804 WP_014663799.1 small-conductance mechanosensitive channel protein MscT -
  JQX68_RS08075 (JQX68_08075) ahpA 1558338..1558880 (+) 543 WP_014663800.1 biofilm-specific peroxidase AhpA -
  JQX68_RS08080 (JQX68_08080) ykuV 1558947..1559405 (+) 459 WP_147771842.1 thiol-disulfide oxidoreductase YkuV -
  JQX68_RS08085 (JQX68_08085) rok 1559854..1560438 (+) 585 WP_014663802.1 transcriptional regulator Rok Regulator
  JQX68_RS08090 (JQX68_08090) cse15 1560478..1561440 (-) 963 WP_147771843.1 spore protein Cse15 -
  JQX68_RS08095 (JQX68_08095) - 1561576..1562175 (+) 600 WP_147771844.1 molybdenum cofactor guanylyltransferase -
  JQX68_RS08100 (JQX68_08100) - 1562226..1563245 (+) 1020 WP_151256996.1 molybdopterin-synthase adenylyltransferase MoeB -
  JQX68_RS08105 (JQX68_08105) glp 1563263..1564555 (+) 1293 WP_147771846.1 gephyrin-like molybdotransferase Glp -
  JQX68_RS08110 (JQX68_08110) mobB 1564516..1565049 (+) 534 WP_147771847.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22141.15 Da        Isoelectric Point: 9.7036

>NTDB_id=540004 JQX68_RS08085 WP_014663802.1 1559854..1560438(+) (rok) [Bacillus sp. LJBS06]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIETAESAESANE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=540004 JQX68_RS08085 WP_014663802.1 1559854..1560438(+) (rok) [Bacillus sp. LJBS06]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAGCCTGACTCTCTGCCTGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTGCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCCATTAAAACATTAAAACGCCATAACGCGG
CGATTAAAAGCTCCGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCGTATCGCGGCCAGTACATTTTAGAAGGTGAAATCGAAACTGCAGA
ATCAGCTGAATCTGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

99.471

97.423

0.969