Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   JQX68_RS05760 Genome accession   NZ_CP070483
Coordinates   1149112..1149690 (+) Length   192 a.a.
NCBI ID   WP_147771714.1    Uniprot ID   -
Organism   Bacillus sp. LJBS06     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1144112..1154690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQX68_RS05740 (JQX68_05740) hemAT 1144623..1145921 (-) 1299 WP_040083529.1 heme-based aerotactic transducer HemAT -
  JQX68_RS05745 (JQX68_05745) - 1146061..1147590 (-) 1530 WP_147771713.1 FAD-dependent oxidoreductase -
  JQX68_RS05750 (JQX68_05750) - 1147702..1148559 (+) 858 WP_071582267.1 SDR family oxidoreductase -
  JQX68_RS05755 (JQX68_05755) - 1148586..1148819 (-) 234 WP_014663441.1 IDEAL domain-containing protein -
  JQX68_RS05760 (JQX68_05760) comK 1149112..1149690 (+) 579 WP_147771714.1 competence transcription factor ComK Regulator
  JQX68_RS05765 (JQX68_05765) - 1149735..1150634 (-) 900 WP_040083522.1 SDR family oxidoreductase -
  JQX68_RS05770 (JQX68_05770) - 1150850..1151119 (+) 270 WP_147771715.1 excalibur calcium-binding domain-containing protein -
  JQX68_RS05775 (JQX68_05775) - 1151163..1152632 (-) 1470 WP_147771716.1 sodium:solute symporter -
  JQX68_RS05780 (JQX68_05780) - 1152629..1152829 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  JQX68_RS05785 (JQX68_05785) - 1153039..1153401 (-) 363 WP_069839063.1 hypothetical protein -
  JQX68_RS05790 (JQX68_05790) - 1153554..1154177 (+) 624 WP_014663448.1 TVP38/TMEM64 family protein -
  JQX68_RS05795 (JQX68_05795) lepB 1154179..1154685 (+) 507 WP_014663449.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22474.72 Da        Isoelectric Point: 7.2636

>NTDB_id=539991 JQX68_RS05760 WP_147771714.1 1149112..1149690(+) (comK) [Bacillus sp. LJBS06]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELEERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=539991 JQX68_RS05760 WP_147771714.1 1149112..1149690(+) (comK) [Bacillus sp. LJBS06]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGTGTGTTTTATGTCAGCATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGATCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCTCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCCTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGAGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

98.958

100

0.99