Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JQX68_RS00580 Genome accession   NZ_CP070483
Coordinates   105697..107073 (+) Length   458 a.a.
NCBI ID   WP_015252992.1    Uniprot ID   A0A0C3LIP7
Organism   Bacillus sp. LJBS06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 100697..112073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQX68_RS00560 (JQX68_00560) ctsR 101050..101514 (+) 465 WP_014662512.1 transcriptional regulator CtsR -
  JQX68_RS00565 (JQX68_00565) mcsA 101528..102085 (+) 558 WP_147773088.1 protein-arginine kinase activator protein McsA -
  JQX68_RS00570 (JQX68_00570) - 102085..103176 (+) 1092 WP_069148826.1 protein arginine kinase -
  JQX68_RS00575 (JQX68_00575) clpC 103173..105605 (+) 2433 WP_014475592.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  JQX68_RS00580 (JQX68_00580) radA 105697..107073 (+) 1377 WP_015252992.1 DNA repair protein RadA Machinery gene
  JQX68_RS00585 (JQX68_00585) disA 107077..108159 (+) 1083 WP_014662516.1 DNA integrity scanning diadenylate cyclase DisA -
  JQX68_RS00590 (JQX68_00590) - 108275..109375 (+) 1101 WP_014662517.1 PIN/TRAM domain-containing protein -
  JQX68_RS00595 (JQX68_00595) ispD 109390..110088 (+) 699 WP_147773083.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  JQX68_RS00600 (JQX68_00600) ispF 110081..110557 (+) 477 WP_014475594.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49438.94 Da        Isoelectric Point: 8.2399

>NTDB_id=539978 JQX68_RS00580 WP_015252992.1 105697..107073(+) (radA) [Bacillus sp. LJBS06]
MAKTKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPITSIETSEEPRVKTQLGEF
NRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSGSSNSVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYIS
SAIQEMNPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGSAGSSITASMEGTRPILVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAISIASSFRDTPPNPADCFIGEVGLT
GEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKPKGIEVIGVANVAEALRTSLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=539978 JQX68_RS00580 WP_015252992.1 105697..107073(+) (radA) [Bacillus sp. LJBS06]
ATGGCTAAAACAAAATCGAAATTCATCTGCCAATCCTGCGGCTACGAGTCTCCAAAATGGATGGGGAAATGTCCGGGCTG
CGGTGCTTGGAATACAATGGTTGAAGAAATGATTAAAAAAGCACCGGCCAATCGGAGAGCGGCTTTTTCTCATTCTGTTC
AAACTGTACAGAAACCTTCACCTATTACGTCAATCGAAACATCAGAAGAACCCCGCGTTAAAACCCAGCTTGGCGAGTTT
AACAGAGTACTCGGCGGAGGTGTCGTTAAAGGCTCCCTCGTTTTAATCGGCGGTGATCCTGGTATCGGAAAGTCAACGTT
ATTACTGCAGGTTTCCGCTCAATTATCAGGCTCATCAAACAGTGTGCTGTATATTTCGGGAGAAGAATCTGTAAAGCAAA
CGAAGCTTCGAGCTGACCGCCTCGGCATTAATAATCCGTCACTGCATGTTTTATCTGAAACCGATATGGAGTATATTTCG
TCTGCTATACAAGAGATGAATCCAGCGTTTGTCGTTGTTGACTCTATTCAAACGGTATACCAAAGCGATATCACATCGGC
ACCGGGCAGCGTTTCACAGGTCAGAGAATGTACCGCTGAGCTAATGAAAATTGCAAAAACAAAAGGTATCCCGATTTTTA
TCGTGGGACACGTGACGAAAGAAGGGTCTATTGCAGGGCCGAGACTGTTGGAGCATATGGTTGACACTGTTTTATATTTT
GAAGGAGAACGCCACCATACTTTCCGCATTTTGCGGGCTGTAAAAAACCGTTTCGGATCTACAAACGAAATGGGCATATT
TGAAATGCGGGAAGAGGGGCTGACTGAGGTTTTGAATCCTTCAGAAATTTTCTTAGAGGAACGCTCTGCGGGTTCCGCGG
GCTCGAGTATCACTGCTTCTATGGAGGGCACTAGACCGATTCTCGTTGAAATTCAGGCGCTCATCTCGCCAACAAGCTTT
GGAAATCCAAGGCGTATGGCAACGGGAATAGACCACAACAGGGTTTCTCTGTTAATGGCTGTATTAGAAAAAAGAGTGGG
GCTGCTGCTGCAAAATCAGGATGCTTATTTGAAAGTGGCTGGCGGCGTTAAGCTTGATGAACCCGCAATTGATCTTGCCA
TTGCGATCAGTATCGCATCAAGCTTTAGAGACACACCTCCAAATCCTGCAGATTGTTTTATTGGAGAAGTGGGATTAACC
GGAGAAGTGCGACGGGTTTCAAGAATTGAACAACGTGTGAAAGAAGCGGCAAAGCTTGGTTTTAAACGCATGATCATACC
CGCGGCTAATCTGGATGGATGGACAAAACCAAAAGGGATTGAGGTTATCGGAGTAGCAAATGTTGCAGAGGCGCTTCGTA
CTTCATTAGGAGGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-222)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C3LIP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996
  radA Streptococcus mitis NCTC 12261

63.355

98.908

0.627
  radA Streptococcus pneumoniae Rx1

63.355

98.908

0.627
  radA Streptococcus pneumoniae D39

63.355

98.908

0.627
  radA Streptococcus pneumoniae R6

63.355

98.908

0.627
  radA Streptococcus pneumoniae TIGR4

63.355

98.908

0.627
  radA Streptococcus mitis SK321

63.135

98.908

0.624