Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JT750_RS21195 Genome accession   NZ_CP070471
Coordinates   4645249..4645884 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain B17932     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4640249..4650884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JT750_RS21165 (JT750_21165) murB 4641347..4642366 (-) 1020 WP_003124431.1 UDP-N-acetylmuramate dehydrogenase -
  JT750_RS21170 (JT750_21170) - 4642363..4642827 (-) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  JT750_RS21175 (JT750_21175) kdsB 4642827..4643591 (-) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JT750_RS21180 (JT750_21180) - 4643591..4643776 (-) 186 WP_003091157.1 Trm112 family protein -
  JT750_RS21185 (JT750_21185) lpxK 4643814..4644812 (-) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  JT750_RS21190 (JT750_21190) - 4644812..4645252 (-) 441 WP_003091161.1 biopolymer transporter ExbD -
  JT750_RS21195 (JT750_21195) exbB 4645249..4645884 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JT750_RS21200 (JT750_21200) comA 4645957..4648182 (-) 2226 WP_058147062.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JT750_RS21205 (JT750_21205) - 4648313..4648846 (+) 534 WP_033990447.1 DUF2062 domain-containing protein -
  JT750_RS21210 (JT750_21210) - 4648934..4650178 (-) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=539952 JT750_RS21195 WP_003091163.1 4645249..4645884(-) (exbB) [Pseudomonas aeruginosa strain B17932]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=539952 JT750_RS21195 WP_003091163.1 4645249..4645884(-) (exbB) [Pseudomonas aeruginosa strain B17932]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATTGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81