Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   JT750_RS06375 Genome accession   NZ_CP070471
Coordinates   1411587..1412111 (-) Length   174 a.a.
NCBI ID   WP_003116261.1    Uniprot ID   Q7WZP2
Organism   Pseudomonas aeruginosa strain B17932     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1406587..1417111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JT750_RS06360 (JT750_06360) - 1406671..1410147 (-) 3477 WP_023100239.1 PilC/PilY family type IV pilus protein -
  JT750_RS06365 (JT750_06365) - 1410161..1410766 (-) 606 WP_003116263.1 pilus assembly protein -
  JT750_RS06370 (JT750_06370) - 1410763..1411578 (-) 816 WP_016254061.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  JT750_RS06375 (JT750_06375) pilV 1411587..1412111 (-) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  JT750_RS06380 (JT750_06380) - 1412121..1412609 (-) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  JT750_RS06385 (JT750_06385) - 1412732..1413232 (-) 501 WP_016562346.1 GspH/FimT family pseudopilin -
  JT750_RS06390 (JT750_06390) thiO 1413372..1414466 (+) 1095 WP_033991130.1 glycine oxidase ThiO -
  JT750_RS06395 (JT750_06395) pilR 1414512..1415849 (-) 1338 WP_003110427.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18763.51 Da        Isoelectric Point: 4.9113

>NTDB_id=539938 JT750_RS06375 WP_003116261.1 1411587..1412111(-) (pilV) [Pseudomonas aeruginosa strain B17932]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL

Nucleotide


Download         Length: 525 bp        

>NTDB_id=539938 JT750_RS06375 WP_003116261.1 1411587..1412111(-) (pilV) [Pseudomonas aeruginosa strain B17932]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WZP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

59.429

100

0.598