Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SPYOHK_RS09000 Genome accession   NZ_AFRY01000001
Coordinates   33440..34195 (+) Length   251 a.a.
NCBI ID   WP_002986719.1    Uniprot ID   A2RBY9
Organism   Streptococcus pyogenes HKU QMH11M0907901     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 28440..39195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYOHK_RS10290 - 29776..29984 (-) 209 Protein_14 hypothetical protein -
  SPYOHK_RS10295 (SPYOHK_00075) - 30140..30421 (-) 282 WP_074375313.1 transposase -
  SPYOHK_RS09010 (SPYOHK_00080) pcsB 30843..32039 (+) 1197 WP_002987691.1 peptidoglycan hydrolase PcsB -
  SPYOHK_RS09005 (SPYOHK_00085) - 32292..33254 (+) 963 WP_002987693.1 ribose-phosphate diphosphokinase -
  SPYOHK_RS09000 (SPYOHK_00090) recO 33440..34195 (+) 756 WP_002986719.1 DNA repair protein RecO Machinery gene
  SPYOHK_RS08995 (SPYOHK_00095) plsX 34298..35305 (+) 1008 WP_002987696.1 phosphate acyltransferase PlsX -
  SPYOHK_RS08990 (SPYOHK_00100) - 35298..35540 (+) 243 WP_002987699.1 phosphopantetheine-binding protein -
  SPYOHK_RS08985 (SPYOHK_00105) purC 35691..36395 (+) 705 WP_002987701.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29516.97 Da        Isoelectric Point: 6.9077

>NTDB_id=53993 SPYOHK_RS09000 WP_002986719.1 33440..34195(+) (recO) [Streptococcus pyogenes HKU QMH11M0907901]
MQLTESLGIVLFNRNYREDDKLVKIFTEVAGKQMFFVKHISRSKMSSIIQPLTIADFIFKLNDTGLSYVVDYSNVNTYRY
INNDIFRLAYASYVLALADAAIADNESDSHLFTFLKKTLDLMEEGLDYEILTNIFEIQILDRFGISLNFHECAICHRTDL
PLDFSHRFSAVLCSEHYYKDNRRNHLDPNVIYLLSRFQKITFDDLRTISLNKDIKKKLRQFIDELYHDYVGIKLKSKTFI
DNLVKWGDIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=53993 SPYOHK_RS09000 WP_002986719.1 33440..34195(+) (recO) [Streptococcus pyogenes HKU QMH11M0907901]
ATGCAACTAACAGAATCACTAGGCATCGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAATTAGTCAAAATATTTAC
TGAAGTAGCAGGTAAGCAGATGTTTTTCGTGAAACATATTAGTCGTTCCAAAATGTCCTCAATCATTCAACCACTAACGA
TTGCTGATTTTATTTTCAAGTTAAATGATACAGGCTTGTCTTATGTTGTTGACTATAGTAACGTTAACACTTATCGGTAT
ATTAATAATGATATTTTTCGATTAGCCTATGCTAGTTATGTCTTAGCATTAGCTGATGCTGCGATTGCAGATAATGAATC
AGATTCGCATTTGTTTACGTTTTTGAAAAAAACACTTGATTTGATGGAAGAGGGCCTAGATTATGAAATTTTGACAAATA
TTTTTGAAATTCAGATATTAGATCGTTTTGGTATTAGTCTAAACTTTCATGAGTGTGCCATTTGTCATCGCACTGATTTA
CCGCTTGATTTTTCCCATCGTTTTTCAGCTGTACTTTGTTCTGAACATTATTACAAAGACAACCGACGTAATCATTTAGA
TCCAAATGTTATCTACTTGTTGAGTCGATTTCAAAAAATCACATTTGATGATTTGAGAACTATTTCATTGAATAAAGACA
TCAAAAAGAAGCTTCGTCAGTTCATTGATGAGTTGTATCACGACTATGTAGGAATCAAATTAAAAAGTAAAACATTCATT
GATAATTTAGTTAAGTGGGGAGATATTATGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2RBY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

60.159

100

0.602

Multiple sequence alignment