Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   LKM46_RS22815 Genome accession   NZ_CP086016
Coordinates   4762008..4762622 (+) Length   204 a.a.
NCBI ID   WP_003091196.1    Uniprot ID   Q02PH1
Organism   Pseudomonas aeruginosa isolate KB-PA_3     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4757008..4767622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LKM46_RS22795 (LKM46_22795) - 4758450..4759079 (+) 630 WP_033968906.1 CsiV family protein -
  LKM46_RS22800 (LKM46_22800) - 4759126..4759863 (-) 738 WP_039027693.1 S-methyl-5'-thioinosine phosphorylase -
  LKM46_RS22805 (LKM46_22805) nagZ 4759875..4760873 (-) 999 WP_042168972.1 beta-N-acetylhexosaminidase -
  LKM46_RS22810 (LKM46_22810) psrA 4761075..4761776 (-) 702 WP_003091195.1 transcriptional regulator PsrA -
  LKM46_RS22815 (LKM46_22815) dinR/lexA 4762008..4762622 (+) 615 WP_003091196.1 transcriptional repressor LexA Regulator
  LKM46_RS22820 (LKM46_22820) sulA 4762634..4763116 (+) 483 WP_033968910.1 SOS-induced cell division inhibitor SulA -
  LKM46_RS22825 (LKM46_22825) - 4763137..4763370 (-) 234 WP_003109483.1 hypothetical protein -
  LKM46_RS22830 (LKM46_22830) - 4763576..4764094 (-) 519 WP_033975946.1 DUF6586 family protein -
  LKM46_RS22835 (LKM46_22835) topA 4764201..4766807 (-) 2607 WP_033975944.1 type I DNA topoisomerase -
  LKM46_RS22840 (LKM46_22840) - 4766898..4767161 (-) 264 WP_033968913.1 DUF1653 domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22505.95 Da        Isoelectric Point: 6.4989

>NTDB_id=539858 LKM46_RS22815 WP_003091196.1 4762008..4762622(+) (dinR/lexA) [Pseudomonas aeruginosa isolate KB-PA_3]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=539858 LKM46_RS22815 WP_003091196.1 4762008..4762622(+) (dinR/lexA) [Pseudomonas aeruginosa isolate KB-PA_3]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAGGCGCTCGCGCGCAAGG
GTGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCATGCCGCCAACGACGATGAG
GGCCTGCCGGTGATCGGACGTGTCGCCGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGGATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATCCTCGACG
GCGACCTGCTGGCCGTCCACGTCACCCGCGAAGCGCGCAACGGCCAGGTGGTAGTCGCGCGGATCGGCGAGGAGGTCACA
GTGAAACGTTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGGCGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(83-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02PH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387